Lost Safari bookmarks and dock changed after shutting down

I shut down my computer at work while I was on vacation 2/5-14. When I turned it back on this morning, the dock was in a different place and was missing all the "keep in dock" icons I had added although the desktop clutter was still there.
When I went on Safari, the homepage was the default one and not the one I had selected. None of the bookmarks that I had been adding over 3 years was there either. No one used my computer and all I did was shut down on 2/2. The user is still highlighted as me. Can anyone shine a light on what happened and how to get my original settings back?
Thank you!

Hi and welcome.....
and all my applications were running so slow
Check the hard disk for free space. Right or control click the MacintoshHD icon. Click Get Info. In the Get Info window you will see Capacity and Available. Make sure you always have a minimum of 15% free disk space.
If there's enough free disk space, launch Disk Utility. It's in your Applications/Utilities folder. Select MacintoshHD in the Sidebar on the left then select the FirstAid tab.
Click: *Verify Disk* (not Verify Disk Permissions). If Disk Utility reports problems, follow the instructions at this link so you can repair the startup disk. You will need your install disc.
http://support.apple.com/kb/HT1782?viewlocale=en_US
*Mac OS X (10.6.4)* <---- if that is correct, you need to update your system software. Click the Apple () menu (top left in your screen) Software Update ...
Carolyn

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