Lots of spinning beach balls

Hello,
I have a Mac mini G4 (see specs in signature) and it worked fine a for a while until at one point a month or two ago, there was something wrong with the file directory or something so I had to do a complete zero erase and install. It worked fine for a while, but lately everything I do has been causing me to see more and more of the dreaded spinning beach ball. For example, clicking on "log in" on the apple discussion page brought about the spinning beach ball. Opening a new window can sometimes bring a spinning beach ball. Even in iChat it will randomly show me the spinning beach ball. iTunes as well has been giving me plenty of grief so much that I can't even listen to music on my computer because it will freeze and the seconds in the song will stop moving and then it plays for a bit and then stops again. I don't know what's wrong with my computer. In the Activity Manager it says I have 660 MB free memory and I have a 94% idle CPU. It's not dusty and it doesn't feel hot, in the iStat Pro widget it says the HD is at 119 degrees Fahrenheit. What the heck is wrong with my computer? It is really frustrating to not be able to even play an MP3 on my computer or have Safari freeze just because I opened a new window. The strange thing is that it always comes back, as in, when it freezes, I just have to wait a little bit and then it starts working again. So far I have tried repairing the disk permissions, repairing the disk, running "sudo periodic daily weekly monthly" and even running AppleJack in "deep clean" mode. Please, any help would be vastly appreciated.
P.S. As I was writing this, I got the beach ball twice.
Message was edited by: el pinguino

There are a number of possible issues that could cause this other than the ones you appear to have attempted to deal with so far.
The most obvious is an issue with Fonts - Macs are sensitive to font conflicts in particular, though some fonts cause problems even with no conflicts. Open Font Book and get it to check and resolve conflicts, then go through the font families and turn off what you absolutely don't need (even if only to run the system for a day or so to see if it helps - they can be turned on again when needed).
Next obvious is prebinding, though with a newly reinstalled system that shouldn't be a problem. Try to update prebinding anyway, just to rule that out.
Also ensure that permissions are repaired and remove all caches. Applejack does this, though personally I prefer YASU. After that is done, then use Disk Utility to check the boot drive (you'll need to boot from another MacOS volume such as the original install disk to effect repairs if needed).
After that, it's possible the issue is a damaged property list file, so grab a copy of Preferential Treatment and scan both user and system levels. Delete anything it flags as a problem.
Lastly (for now at least), create a new user on the system and log into that to see if that user suffers the same issues.

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