Loud Audio Noise while Capturing in PP 5.5

I am using a Formac Firewire Audio & Video external capture device with a Firewire 400 to 800 cable to my 12 Core Mac Pro 2.9 GHZ.
Does anyone else use this device?
I am getting a strong audio noise thru the firewire port regardless if my audio input in the "Line In" or "Digital In" in the system.
The noise does not occur in any other application that records video which uses the system audio line in.
I guess my question is "Can you change the Audio Input Device" fo Capturing Video in PP ?
I cant find it .. so I guess not.

Some more information which might help.
Below is a grab of a sequence I've created in PP to show what I'm seeing.
As you can see there are two clips in the timeline, the first pink clip is the finished AE comp which has been imported into PP via the file menu and placed into the timeline, both video and audio play, and are present in the timeline (in pink) so that is a work around if necessary.
The second clip in the timeline has been dynamically linked via the FILE MENU/ADOBE DYNAMIC LINK/REPLACE WITH AFTER EFFECTS COMPOSITION. The video effects that have been applied in the AE comp appear in PP but no audio and as you can see in the PP timeline the A1 is still the origonal file's audio track (in blue under the pink AE comp)

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