Love lossless but have playback problems

I have a 3G 30gig iPod. I have about 10 CD's ripped to it in Apple Lossless. Oddly, I'm getting jerky, audio cutouts at the beginning of the song, some songs start playing and then skip to the next song, or the end of the song gets cut-off. When it does play correctly I'm getting great sound via an Emmeline SR-71 headphone amp., and Sennheiser 600 headphones.
Note none of this happens when I rip in Apple's default standard. Battery is fully charged when I do this, and the battery indicator is at least 3/4ths full when these problems happen.
I'm sure this my be some kind of buffering problem. Do the new one suffer from this problem with Apple Lossless? Do they have bigger buffers? Just wondering?

I'm having similar problems... the songs skip and the counter doesn't act smoothly. It seems to be a problem with the software, since I haven't had problems with previous versions and the same setup I currently have; my library on an external drive and connecting to speakers through airport express base station. I've tried to get a previous version of itunes where I seemed to have no problems, but have found it impossible. Followed some links within this forum and the downloads came up empty. Apple should really make it easier to revert to previous downloads until they have the bugs really worked out! That would be the responsible thing to do for their customers.

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