M.2 Compatibilityand Bandwidth Question

Hello all,
I am going to be building my first PC  and am trying to get all of my information straight before i buy everything. I am looking to get:
Intel i7 5930K
MSI X99 Gaming 9 AC mobo
512 GB Samsung xp941 SSD
gigabyte gtx 980 g1 gaming (x2)
I have tried searching low and high through the internet, forums, and manual but cannot come up with a 100% sure answer.
So my question is if i have the xp941 in an adapter in a PCIe slot, being that it is PCIe gen 2 and x4, will that affect the bandwidth of my two graphics cards running at gen3 x16 each? I am not sure if putting a gen 2 in a gen3 slot downgrades all of the slots to the lowest generation or even lower lanes. And if i am using a M.2 PCIe adapter card (only using the adapter for the heat sink) will i still be able to boot from the SSD?
Also, looking at the compatibility list for this board, it shows the xp941 but only in the 256 GB size. Will the 512 GB version still be compatible?
Thank you all so much for your help in advance

Quote
So my question is if i have the xp941 in an adapter in a PCIe slot, being that it is PCIe gen 2 and x4, will that affect the bandwidth of my two graphics cards running at gen3 x16 each? I am not sure if putting a gen 2 in a gen3 slot downgrades all of the slots to the lowest generation or even lower lanes.
First of all using a gen2 card does not affect cards in other slots. Gen3 cards in gen3 slots will stay at gen3. However there are population rules that will switch available lanes depending on the slots populated and the cpu used (5820K: 28 lanes / 5930K and above: 40 lanes). To keep both card in x16 mode and using the M.2 adapter card you need to follow the population rules for 3-way SLI. The vgas need to be used in PCI_E1 and PCI_E4 while the M.2 card needs to be used in PCI_E5. Of course it would make more sense to use the M.2 SSD in the onboard M.2 slot and don't use an adapter card at all. With your 40 lane cpu you could still use vgas in PCI_E1 and 4 while using the SSD in the M.2 slot with full bandwith.
Quote
And if i am using a M.2 PCIe adapter card (only using the adapter for the heat sink) will i still be able to boot from the SSD?
Usually yes.
Quote
Also, looking at the compatibility list for this board, it shows the xp941 but only in the 256 GB size. Will the 512 GB version still be compatible?
There should be no problem as the capacity should be pretty irrelevant if the SSD type is compatible. MSi can't test all drives and other stuff available so a component not mentioned in the list is not automatically considered incompatible but in most cases simply not tested. For a confirmation - if wanted - you need to contact MSI directly: >>How to contact MSI.<<

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