.m4V files don't appear in iTunes until played from iTunes' 'Movies' folder

Some .m4v camcorder movie files (from a recent .avi conversion using Handbrake) just don't appear in my iTunes 'Movies' library until I double-click on them in the iTunes 'Movies' folder. Handbrake did the batch conversion and placed the converted files in the iTunes 'Movies' folder.
All of the converted files are visible in that 'Movies' folder of iTunes. And when I double-click them they play in an iTunes window. iTunes 'Movies' section seems unable to display them until they have first been played from the iTunes 'Movies' folder. Am I missing something about the way iTunes handles .m4v files?
Does anyone have any suggestions on how to fix this problem? Any idea what the issue might be?
Thanks.

Problem.
I just tried turingtest2's suggestion and it didn't work.
I converted an H264 .mov file in Handbrake and output the conversion to the 'Automatically Add to iTunes' folder. But it was not added to iTunes - it ended up in the 'Not Added' folder and remained there until I played it from that location. Then it immediately turned up in iTunes 'Movies' folder.
The Handbrake conversion was to an 'Apple TV' compatible .m4v file.
Any idea what the problem might be?

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