Mac Mail - Can't restore 'On My Mac' folders

Hi All,
I could not find any direct reference to my question - believe me I searched everywhere before coming here.
Some details:
- OS X 10.7.4
- Mail 5.2 (1278)
Prior to my intervention, Mail was not really running at all; It was making entire system run slow and I could not send mail at all. I decided to backup my Mail folder and Export all the 'On My Mac' folders before making any changes.
After all was backed up, I rm -rf ~/Library/Mail ; I then reopened my Mail app. I re-added the old account. All my online stuff is fine obviously as it is delivered through IMAP. The 'On My Mac' stuff however is seemingly a different story. I attempted to import the exported 'On My Mac' folders, however after they were reimported, none of the subfolders were there, and 1 mailbox in particular did not report an import failure, but does not even import into the 'On My Mac' section.
I also attempted moving the old Mailbox .mbox package/folders to the same place they had been, but this does not seem to work either. I am just presented with an empty folder structure upon reopening Mac Mail.
Could someone please help?
If any other details are required please let me know.
Regards,
Brad

Never mind. I ended up fixing it manually.

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