Mac pro 4,1 2009 every OS but the Snow Leopard takes 6gb of RAM just on boot? Yosemite unusable

I have a 2009 Mac Pro quad 2.66 ghz with original 12gb of ram(an option at time of pruchace, but I also have different modules for 6gb from another machine of the same series, problem is not related to the RAM modules). I also have multiple hard drives and tried installing everything from Lion onwards to any of those (even having a single drive in the system), and the problem presists.
The issue:
When I boot up Snow Leopard system takes around 1.5-2gb of ram and that is perfectly fine. Everything works great.
When I boot up Lion, Mountain Lion, Mavericks, Yosemite, the system itself takes 6gb of RAM or more just too boot. This can't be right, how would any newer Mac even work with their 4gb.
I noticed that in Activity monitor system automatically opens a ton of apps that have no use on my system like WiFi(that I don't have). Seems like it automatically boots every single app that is part of the system, it takes it like 30 minutes to load all those useless features, and system is crawling then, works ok 30 minutes in but I have half my ram wasted.
How do I stop it from doing this? Everything is fine with Snow Leopard, but I am stuck in it, and I can't purchase a lot of apps that I would if I could actually use newer software?

Problem description:
Yosemite takes up 4.5-6gb of ram just on boot compared to the 1.5-2 gb that Snow Leopard takes on the same system
Mac pro 2009 4,1 quad.
EtreCheck version: 2.1.8 (121)
Report generated 3 Apr 2015 19:51:26 GMT+2
Download EtreCheck from http://etresoft.com/etrecheck
Click the [Click for support] links for help with non-Apple products.
Click the [Click for details] links for more information about that line.
Hardware Information: ℹ️
    Mac Pro (Early 2009) (Technical Specifications)
    Mac Pro - model: MacPro4,1
    1 2.66 GHz Quad-Core Intel Xeon CPU: 4-core
    12 GB RAM Upgradeable
        DIMM 1
            4 GB DDR3 ECC 1066 MHz ok
        DIMM 2
            4 GB DDR3 ECC 1066 MHz ok
        DIMM 3
            4 GB DDR3 ECC 1066 MHz ok
        DIMM 4
            Empty
    Bluetooth: Old - Handoff/Airdrop2 not supported
Video Information: ℹ️
    NVIDIA GeForce GT 120 - VRAM: 512 MB
        LED Cinema Display 2560 x 1440
System Software: ℹ️
    OS X 10.9.5 (13F34) - Time since boot: 0:10:33
Disk Information: ℹ️
    HL-DT-ST DVD-RW GH41N
    OCZ-VERTEX PLUS R2 disk0 : (61,86 GB)
        EFI (disk0s1) <not mounted> : 210 MB
        System (disk0s2) /Volumes/System : 61.51 GB (17.77 GB free)
    WDC WD15EVDS-63V9B0 disk1 : (1,5 TB)
        EFI (disk1s1) <not mounted> : 210 MB
        15 (disk1s2) / : 1.42 TB (103.13 GB free)
        Recovery HD (disk1s3) <not mounted>  [Recovery]: 650 MB
        Untitled (disk1s4) /Volumes/Untitled : 83.00 GB (62.76 GB free)
    WDC WD6400AAKS-41H2B0 disk2 : (640,14 GB)
        EFI (disk2s1) <not mounted> : 210 MB
        OSX (disk2s2) /Volumes/OSX : 639.79 GB (66.55 GB free)
USB Information: ℹ️
    Western Digital My Book 1 TB
        My Book (disk3s1) /Volumes/My Book : 1.00 TB (253.61 GB free)
    Apple, Inc. Keyboard Hub
        Logitech USB Receiver
        Apple, Inc Apple Keyboard
    WALTOP International Corp. Media Tablet
    Apple Inc. Display Audio
    Apple Inc. Display iSight
    Apple Inc. Apple LED Cinema Display
    Apple Inc. BRCM2046 Hub
        Apple Inc. Bluetooth USB Host Controller
Configuration files: ℹ️
    /etc/sysctl.conf - Exists
    /etc/hosts - Count: 29
Gatekeeper: ℹ️
    Mac App Store and identified developers
Kernel Extensions: ℹ️
        /System/Library/Extensions
    [loaded]    com.nvidia.CUDA (1.1.0)
        /Volumes/OSX/Applications/Capture One.app
    [not loaded]    com.Leaf.driver.LeafFwXDriverMatcher (1.2.0d1)
        /Volumes/System/Applications/iShowU HD.app
    [not loaded]    com.Cycling74.driver.Soundflower (1.3.1)
Startup Items: ℹ️
    CUDA: Path: /System/Library/StartupItems/CUDA
    Startup items are obsolete in OS X Yosemite
Problem System Launch Agents: ℹ️
    [running]    com.blackmagic-design.DaVinciResolveTangentPanelDaemon.plist [Click for support] - WHAT is this??? I installed Da Vinci resolve from the Da Vinci site, it's a free app for single core use and an industry standard, how can it be problematic?
Launch Agents: ℹ️
    [not loaded]    com.adobe.AAM.Updater-1.0.plist [Click for support]
    [loaded]    com.adobe.CS5ServiceManager.plist [Click for support]
    [running]    com.canon.MFManager.plist [Click for support]
    [loaded]    com.nvidia.CUDASoftwareUpdate.plist [Click for support]
    [running]    com.penpad.penpadtablet.plist [Click for support]
    [failed]    com.waltop.waltoptablet.plist [Click for support]
Launch Daemons: ℹ️
    [loaded]    com.adobe.fpsaud.plist [Click for support]
    [loaded]    com.adobe.SwitchBoard.plist [Click for support]
    [running]    com.edb.launchd.postgresql-8.4.plist [Click for support]
User Launch Agents: ℹ️
    [loaded]    com.adobe.AAM.Updater-1.0.plist [Click for support]
    [loaded]    com.google.keystone.agent.plist [Click for support]
User Login Items: ℹ️
    iTunesHelper    Application  (/Applications/iTunes.app/Contents/MacOS/iTunesHelper.app)
    iTunesHelper    Application  (/Volumes/OSX/Applications/iTunes.app/Contents/MacOS/iTunesHelper.app)
    Activity Monitor    Application  (/Applications/Utilities/Activity Monitor.app)
    FKeyHandlerX    Application Hidden (/Applications/FKeyHandlerX.app)
Internet Plug-ins: ℹ️
    Silverlight: Version: 5.1.10411.0 - SDK 10.6 [Click for support]
    FlashPlayer-10.6: Version: 11.9.900.170 - SDK 10.6 [Click for support]
    Flash Player: Version: 11.9.900.170 - SDK 10.6 Outdated! Update
    QuickTime Plugin: Version: 7.7.3
    JavaAppletPlugin: Version: 14.9.0 - SDK 10.7 Check version
    Default Browser: Version: 537 - SDK 10.9
3rd Party Preference Panes: ℹ️
    CUDA Preferences  [Click for support]
    Flash Player  [Click for support]
    Growl  [Click for support]
Time Machine: ℹ️
    Time Machine not configured!
Top Processes by CPU: ℹ️
         5%    WindowServer
         1%    fontd
         0%    mds_stores
         0%    Activity Monitor
         0%    Google Chrome
Top Processes by Memory: ℹ️
    283 MB    Finder
    193 MB    Google Chrome
    168 MB    mds_stores
    168 MB    com.apple.IconServicesAgent
    52 MB    WindowServer
Virtual Memory Information: ℹ️
    9.50 GB    Free RAM
    1.65 GB    Active RAM - WRONG, I ONLY WISH, it's more like:
    834 MB    Inactive RAM
    892 MB    Wired RAM
    653 MB    Page-ins
    0 B    Page-outs
Diagnostics Information: ℹ️
    Apr 3, 2015, 07:39:26 PM    Self test - passed
Basically, 5GB of my RAM is gone just because I turned my computer on, and ok this is on HHD, but even then Snow Leopard is completely functional one minute after I push the power button, Yosemite takes that long too boot, too, but then it takes it another half hour to stop spinning the hard drvie for it's unused apps and actually let me load non-system apps and files and start working.
I THINK I FIGURED IT OUT! How do I stop the system from cache-ing recent files?

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    Someone? not working? I think they mean that some features won't be supported, like perhaps OpenCL.
    Use GT120 cheap and works or shell out for ATI 4870 (or wait and see if anything comes out this year).
    http://store.apple.com/us/product/MC002ZM/A
    Most of what is written seems like it wasn't a tech writer, but then Apple doesn't get into telling customers what UEFI/EFI64 is the over-riding requirement.
    Take Apple hardware specs with grain of salt.
    The 4870 works in ALL Mac Pro models (and look at the threads, or the comments on the product page why not). No mystery there either.
    http://store.apple.com/us/product/MB999ZM/A
    Even the GTX 285 works, if interested.
    http://store.apple.com/us/product/TW387ZM/A
    And one person has both ATI 4870 + GTX 285, using a couple break out power cables and adapters.
    *2009 Mac Pro owner running GTX-285 and ATI 4870 Cards*
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    I've got the dual high-power graphics cards running without a hitch. It's rendering with the GTX 285 and CUDA now while I use the computer with the Radeon 4870 (no GUI lag, which is a nice change from using the GTX 285) http://www.xlr8yourmac.com/

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    FatMac your post of the firmware data got me digging deeper....   To sum-up
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    I assumed I was done-for.
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    CCC'd the old sparse image on to a spare hard drive, restarted & Bingo!  I was running Snow Leopard! 
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    Anyone know how to burn an 8 Gig sparse image onto to several DVD's for archiving? 
    FatMac,  the screen capture was the old fashoned way... I pointed a camera at it. 
    Thanks to everyone for their contributions.  
    Today was a good day!!!    

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    I bough a Mac Pro 2010 second hand and deleted all the files without backing up now is asking me for the Apple ID of the person who installed maverick,any ideas

    If the Mac's firmware was updated, you can try this Internet Recovery:
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    Hello,
    I need to upgrade from my present operating version Mac OS X , Version 10.6.8 to the Snow Leopard. However, I am unable to locate this app. Is it still available? Any help would be greatly appreciated.
    John

    Prior to upgrading to Maverick, you must FIRST make sure your iMac meets all of its system requirements. 

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    What will you be using it for. What model even was "old faithful" and there are a number of former G5 owners of course.
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    Thanks,
    Matt M.

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    I've installed Mavericks on my Mac Pro. It works well, generally, but will not stay asleep! Pressing the power button twice sometimes extends the sleep mode but even that seldom results in a full overnight sleep.  File sharing off. What else can help?

    Hi fremley,
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    This article may be helpful with determining why your Mac Pro doesn't stay in sleep mode:
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    http://support.apple.com/kb/HT1776
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    Some System Preferences settings (see below)
    Open applications (see below)
    Input devices (see below)
    Expansion cards (see below)
    Additional drives, such as USB, FireWire, DVD, or CD drives (see below)
    Best Regards,
    Jeremy

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