Mac Pro Firewire Problems

I use an external Firewire 800 drive for Time Machine and a MOTU 828 mkII Audio Interface (Firewire 400) on my new (refurb) Mac Pro. Everytime I shutdown, restart or sleep the Mac Pro, I lose Firewire connection to either the drive, the audio interface or both. Unplugging and replugging the firewire cables usually doesn't work and I'll have to restart the Mac until it recognizes the firewire devices. Regardless of what start-up procedure I use (firewire plugged in before or after), it's hit or miss. Usually once it's recognized, it's stable. Oddly, the firewire devices show up in System Profiler even if they aren't recognized elsewhere - desktop for the drive or Audio Midi Setup for the audio interface. On my old G5 with Tiger, the same drive and audio interface worked perfectly and I could turn them on or off at anytime and have them be instantly recognized.
I have seen posts about similar problems both here and on other boards. Has anyone got to the bottom of this problem? Is it my Mac Pro or is it a Leopard bug? Just curious before I make the call to Apple.

Sorry if I wasn't clear in my first post. I have the audio interface plugged into the rear firewire 400 port and the backup drive plugged into the rear firewire 800 port. No daisy-chaining involved and strictly just those two firewire devices. I'm going to do some testing with using the front ports and see if that makes a difference. Thanks.

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