Mac pro late 2013 one usb port doesn't work

Hello there, I've purchased a used Mac Pro (4 cores, late 2013), and seems like one USB port (lower right) is dead, the rest work fine.
Things I tried:
1. Fixing disk permissions.
2. Resetting NVRAM/PRAM.
3. Running Apple diagnostics (Holding D / Holding Cmd+D during startup).
Nothing helped. What do I do now?

When you plug something in, go to the System Profiler (Apple menu, then "more info"). Does it recognize whatever is in the USB port? Could be a driver issue...

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    I was using a hub, so I immediately removed that upon the first issues.  But the USB has still frozen after the removal of the hub. The HD is a self powered G-Tech drive.  I'll have to play around a bit more will all of your suggestions this weekend.
    I woke up the computer just now to check the discussion, an am greeted with a notification from Mavericks that the "Disk Not Ejected Properly. (Eject disk before disconnecting or turning it off)"  which the disk is still connected, and the usb seems to still work fine.  In fact I was able to unplug the USB cable for the G-Tech HD, and then replug it in, everything reappeared fine.  The USB bus was not frozen (this time).
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    I was using a hub, so I immediately removed that upon the first issues.  But the USB has still frozen after the removal of the hub. The HD is a self powered G-Tech drive.  I'll have to play around a bit more will all of your suggestions this weekend.
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    EtreCheck version: 2.0.5 (90)
    Report generated October 19, 2014 at 9:55:08 AM GMT+8
    Hardware Information: ℹ️
      Mac Pro (Late 2013) (Verified)
      Mac Pro - model: MacPro6,1
      1 3.7 GHz Quad-Core Intel Xeon E5 CPU: 4-core
      12 GB RAM Upgradeable
      DIMM1
      4 GB DDR3 ECC 1866 MHz ok
      DIMM2
      4 GB DDR3 ECC 1866 MHz ok
      DIMM3
      4 GB DDR3 ECC 1866 MHz ok
      DIMM4
      empty empty empty empty
      Bluetooth: Good - Handoff/Airdrop2 supported
      Wireless:  en2: 802.11 a/b/g/n/ac
    Video Information: ℹ️
      AMD FirePro D300 - VRAM: 2048 MB
      AMD FirePro D300 - VRAM: 2048 MB
      DELL U2711 2560 x 1440 @ 59 Hz
    System Software: ℹ️
      OS X 10.10 (14A389) - Uptime: 0:4:9
    Disk Information: ℹ️
      APPLE SSD SM0256F disk0 : (251 GB)
      S.M.A.R.T. Status: Verified
      EFI (disk0s1) <not mounted> : 210 MB
      Macintosh HD (disk0s2) /  [Startup]: 150.00 GB (39.42 GB free)
      Recovery HD (disk0s3) <not mounted>  [Recovery]: 650 MB
      BOOTCAMP (disk0s4) /Volumes/BOOTCAMP : 100.14 GB (12.33 GB free)
    USB Information: ℹ️
      Apple Inc. BRCM20702 Hub
      Apple Inc. Bluetooth USB Host Controller
      SteelSeries Sensei Raw Gaming Mouse
      3Dconnexion SpacePilot PRO
      Dell Dell USB Keyboard
      Generic Ultra Fast Media Reader
    Thunderbolt Information: ℹ️
      Apple Inc. thunderbolt_bus_2
      Apple Inc. thunderbolt_bus_1
      Apple Inc. thunderbolt_bus_0
    Configuration files: ℹ️
      /etc/sysctl.conf - Exists
      /etc/hosts - Count: 20
    Gatekeeper: ℹ️
      Mac App Store and identified developers
    Kernel Extensions: ℹ️
      /Applications/Capture One 7.app
      [not loaded] com.Leaf.driver.LeafFwXDriverMatcher (1.2.0d1) Support
      /Applications/DiskWarrior.app
      [not loaded] com.alsoft.Preview (4.4) Support
      /Library/Extensions
      [loaded] com.3dconnexion.driver (10.2.0 - SDK 10.8) Support
      /Library/Extensions/3Dconnexion.kext/Contents/PlugIns
      [not loaded] com.3dconnexion.virtual.driver (10.2.0) Support
      /System/Library/Extensions
      [loaded] com.avira.kext.FileAccessControl (1.0.0d1 - SDK 10.9) Support
      [not loaded] com.nvidia.CUDA (1.1.0) Support
    Startup Items: ℹ️
      CUDA: Path: /System/Library/StartupItems/CUDA
      Startup items are obsolete and will not work in future versions of OS X
    Launch Agents: ℹ️
      [loaded] com.avira.antivirus.general.agent.plist Support
      [loaded] com.avira.antivirus.ipm.ui.plist Support
      [failed] com.avira.antivirus.notifications.agent.plist Support
      [loaded] com.avira.antivirus.odscan.default.plist Support
      [loaded] com.avira.antivirus.scheduler.agent.plist Support
      [running] com.avira.antivirus.systray.plist Support
      [loaded] com.avira.antivirus.telemetry.agent.plist Support
      [loaded] com.avira.antivirus.update.default.plist Support
      [loaded] com.nvidia.CUDASoftwareUpdate.plist Support
    Launch Daemons: ℹ️
      [loaded] com.adobe.fpsaud.plist Support
      [failed] com.avira.antivirus.dbcleaner.plist Support
      [failed] com.avira.antivirus.ipm.loader.plist Support
      [running] com.avira.helper.watchdox.plist Support
      [loaded] com.bombich.ccc.plist Support
      [running] com.cleverfiles.cfbackd.plist Support
      [running] com.edb.launchd.postgresql-8.4.plist Support
    User Launch Agents: ℹ️
      [loaded] com.google.keystone.agent.plist Support
      [loaded] com.logos.LogosIndexer.plist Support
      [running] com.spotify.webhelper.plist Support
    User Login Items: ℹ️
      SmartDaemon Application (/Library/Application Support/CleverFiles/SmartDaemon.app)
      iTunesHelper Application (/Applications/iTunes.app/Contents/MacOS/iTunesHelper.app)
      Caffeine Application (/Applications/Caffeine.app)
      Alfred Application (/Applications/Alfred.app)
      CrossOver CD Helper Application (/Applications/CrossOver.app/Contents/Resources/CrossOver CD Helper.app)
      3DconnexionHelper Application (/Library/PreferencePanes/3Dconnexion.prefPane/Contents/Resources/3DconnexionHe lper.app)
      Cinch Application (/Applications/Cinch.app)
    Internet Plug-ins: ℹ️
      FlashPlayer-10.6: Version: 15.0.0.189 - SDK 10.6 Support
      Flash Player: Version: 15.0.0.189 - SDK 10.6 Support
      QuickTime Plugin: Version: 7.7.3
      Default Browser: Version: 600 - SDK 10.10
    3rd Party Preference Panes: ℹ️
      3Dconnexion  Support
      CUDA Preferences  Support
      Flash Player  Support
      FUSE for OS X (OSXFUSE)  Support
    Time Machine: ℹ️
      Time Machine not configured!
    Top Processes by CPU: ℹ️
          16% avguard.bin
          3% WindowServer
          1% fontd
          0% syslogd
          0% AppleSpell
    Top Processes by Memory: ℹ️
      436 MB avguard.bin
      245 MB mds_stores
      155 MB Safari
      129 MB SmartDaemon
      116 MB Calendar
    Virtual Memory Information: ℹ️
      5.70 GB Free RAM
      5.21 GB Active RAM
      678 MB Inactive RAM
      1.29 GB Wired RAM
      1.03 GB Page-ins
      0 B Page-outs

  • Mac Pro (Late 2013) Keeps Crashing Please Help

    My new Mac Pro (Late 2013) keeps crashing when I use thunderbolt devices.
    My set up is as follows:
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    Anonymous UUID:       51D5171F-CF6C-C4BE-82BD-E6597F55DFE5
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    Machine-check capabilities: 0x0000000001000c1b
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    signature: 0x306e4
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    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 1: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 2: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 3: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 4: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 5: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 6: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 7: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 8: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 9: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 10: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 11: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 12: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 13: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 14: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    Processor 15: IA32_MCG_STATUS: 0x0000000000000005
    IA32_MC7_STATUS(0x41d): 0xbe00000000010092
    IA32_MC7_ADDR(0x41e):   0x00000001323ca340
    IA32_MC7_MISC(0x41f):   0x00000001405c5c86
    panic(cpu 3 caller 0xffffff801b0dc709): "Machine Check at 0xffffff7f9cbd0b29, registers:\n" "CR0: 0x000000008001003b, CR2: 0x0000000111da7000, CR3: 0x000000002df83000, CR4: 0x00000000001606e0\n" "RAX: 0x0000000000000020, RBX: 0xffffff80a1019000, RCX: 0x0000000000000001, RDX: 0x0000000000000000\n" "RSP: 0xffffff87308b3d40, RBP: 0xffffff87308b3d70, RSI: 0x0000000000000001, RDI: 0xffffff80a0ea0a00\n" "R8:  0x0000000000000000, R9:  0x0000000000000006, R10: 0xffffff8731783de0, R11: 0xffffffffffffffff\n" "R12: 0xffffff80a0fda6c0, R13: 0x0000000000000006, R14: 0xffffff7f9cbe5e20, R15: 0x00000000000007b0\n" "RFL: 0x0000000000000046, RIP: 0xffffff7f9cbd0b29, CS:  0x0000000000000008, SS:  0x0000000000000010\n" "Error code: 0x0000000000000000\n"@/SourceCache/xnu/xnu-2422.92.1/osfmk/i386/trap_native.c:1 68
    Backtrace (CPU 3), Frame : Return Address
    0xffffff8726d65e80 : 0xffffff801b022fa9
    0xffffff8726d65f00 : 0xffffff801b0dc709
    0xffffff8726d66060 : 0xffffff801b0f3c1f
    0xffffff87308b3d70 : 0xffffff7f9cbc1663
    0xffffff87308b3e70 : 0xffffff7f9cbc0899
    0xffffff87308b3f30 : 0xffffff801b0dd73c
    0xffffff87308b3f50 : 0xffffff801b0375ba
    0xffffff87308b3f90 : 0xffffff801b037908
    0xffffff87308b3fb0 : 0xffffff801b0d7047
          Kernel Extensions in backtrace:
             com.apple.driver.AppleIntelCPUPowerManagement(216.0)[70947979-EA9B-39D1-AD15-CD AB19F031AF]@0xffffff7f9cbbe000->0xffffff7f9cbe8fff
    BSD process name corresponding to current thread: kernel_task
    Mac OS version:
    13C1021
    Kernel version:
    Darwin Kernel Version 13.1.0: Wed Apr  2 23:52:02 PDT 2014; root:xnu-2422.92.1~2/RELEASE_X86_64
    Kernel UUID: E9CF78E2-1E9F-3B6F-81A4-FEE6C6D0E4D5
    Kernel slide:     0x000000001ae00000
    Kernel text base: 0xffffff801b000000
    System model name: MacPro6,1 (Mac-F60DEB81FF30ACF6)
    System uptime in nanoseconds: 12337930919
    last loaded kext at 11985022345: com.apple.filesystems.msdosfs          1.9 (addr 0xffffff7f9b953000, size 65536)
    loaded kexts:
    com.nvidia.CUDA          1.1.0
    com.promise.driver.stex          5.2.7
    com.apple.filesystems.msdosfs          1.9
    com.apple.filesystems.autofs          3.0
    com.apple.driver.AppleBluetoothMultitouch          80.14
    com.apple.iokit.IOBluetoothSerialManager          4.2.3f10
    com.apple.driver.AudioAUUC          1.60
    com.apple.driver.AGPM          100.14.15
    com.apple.driver.X86PlatformShim          1.0.0
    com.apple.driver.ApplePlatformEnabler          2.0.9d1
    com.apple.driver.AppleHDAHardwareConfigDriver          2.6.0f1
    com.apple.driver.AppleHDA          2.6.0f1
    com.apple.driver.AppleGraphicsDevicePolicy          3.4.35
    com.apple.driver.AppleUpstreamUserClient          3.5.13
    com.apple.driver.AppleMCCSControl          1.1.12
    com.apple.iokit.IOUserEthernet          1.0.0d1
    com.apple.Dont_Steal_Mac_OS_X          7.0.0
    com.apple.driver.AppleHWAccess          1
    com.apple.kext.AMDFramebuffer          1.2.0
    com.apple.driver.ACPI_SMC_PlatformPlugin          1.0.0
    com.apple.driver.AppleIntelMCEReporter          104
    com.apple.driver.AppleLPC          1.7.0
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    com.apple.driver.AppleThunderboltIP          1.1.2
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    com.apple.driver.AppleFileSystemDriver          3.0.1
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    com.apple.driver.AppleUSBHub          666.4.0
    com.apple.iokit.IOAHCIBlockStorage          2.5.1
    com.apple.driver.AppleUSBXHCI          670.4.0
    com.apple.iokit.AppleBCM5701Ethernet          3.8.1b2
    com.apple.driver.AirPort.Brcm4360          831.21.63
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    com.apple.iokit.IOHDAFamily          2.6.0f1
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    com.apple.driver.AppleSMC          3.1.8
    com.apple.driver.AppleThunderboltEDMSink          2.1.3
    com.apple.driver.AppleSMBusPCI          1.0.12d1
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    com.apple.driver.AppleThunderboltDPInAdapter          3.1.7
    com.apple.driver.AppleThunderboltDPAdapterFamily          3.1.7
    com.apple.driver.AppleThunderboltPCIUpAdapter          1.4.5
    com.apple.driver.AppleThunderboltPCIDownAdapter          1.4.5
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    com.apple.driver.mDNSOffloadUserClient          1.0.1b5
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    com.apple.security.sandbox          278.11
    com.apple.kext.AppleMatch          1.0.0d1
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    com.apple.driver.DiskImages          371.1
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    com.apple.driver.AppleFDEKeyStore          28.30
    com.apple.driver.AppleACPIPlatform          2.0
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