Mac Pro never boots first try

Just bought a refurbished Mac Pro and it never boots the first try, (always on the second try,) if it's been turned off for awhile. It clicks and spins a couple times, but no chime and no display. So I hold the power button until it shuts off, then it will boot normally the second attempt.
Another clue, although audio is set to the sound card, the chime is through the onboard speaker when it does boot first time. It seems like the config is lost until power can be applied. Is there a battery power to the mother board missing possibly?
Is this a known problem? Is there a fix? I read many similar complaints on the web. I have had so many problems getting this computer ordered, now it arrives and is broken, very bummed that Apple cannot get my order correct multiple times, then at last sends me a 'broken' computer
thanks
td

For all of you who may come accross this thread - I have a solution, even though the thread is a bit old.
I have a refurbished Mac Pro Early 2009 and it also never booted on the first try (identical to tduncan). I brought it to the Apple genius bar to get it fixed, they replaced the start button components. When I got home, the very same problems appeared. After several calls to Apple support (I had purchased the extended warranty) and a return to the Apple store again for repairs, the problem still was not resolved. I gave up and simply accepted that it was either the video card (NVIDIA GeForce GT 120 512 MB) as had been suggested in some help forums or still a problem with the start button. I started leaving the Mac Pro on all the time, and when I did turn it off, I knew that I would have to let it try to boot up, let it stall, then restart the process by turning off and turning on the Mac Pro again. Aside from this irritation, the Mac Pro runs really well, and I have upgraded it a lot over the past 2 years.
Long story short, I ended up keeping an old PC to play one of my favourite games (Mech Warrior 3 and 4) and one day, the PC started acting up. After a lot of frustration (which is why I left the Windows world),  I ended up replacing the internal battery and everything was fine.
I came accross this thread yesterday, and the suggestion from Limnos about the weak PRAM battery reminded me of the old PC and how it ran perfectly after replacing the motherboard battery for the timer. Today, I purchased a new internal backup battery at a local Canadian Tire, swapped batteries and instantly, the problem was resolved. I have tested it several times today, and the pattern of "2 tries" to start is definetely broken 
Funny though that the Genius bar didnt figure this - sometimes it's the little things that are overlooked! I am posting this just in case anyone else runs into a similar situation!
Cheers
Stu

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