Mac Pro Slower after adding second hard drive

My work computer is a Mac Pro 3,1 running Lion 10.7.3 with 4GB RAM and a 1TB hard drive. It was performing well running programs like Adobe CS5 and Final Cut Pro until I added a second 1TB drive (Western Digital WD1001FALS). After that upgrade Photoshop is way slower while programs like InDesign and Final Cut are noticable slower.
Is there any reason for this?  Anything that can be done outside of a memory upgrade?

Let me try to direct you to some tips on CS5, and suggest that more hard drives properly used (OS, scratch, data, backup, array) can help, but that one drive and 4GB RAM is under performing.
Optimize Photoshop CS5
Optimizing Photoshop Overview
Adobe Photoshop FAQ
Optimize performance Photoshop
What are you using the WD1001FALS for? data? scratch?
And open Activity Monitor and check pageouts. Unless your use if very very light, I can't see that as being enough for even CS5 code and some OS X let alone any more apps.
Activity Monitor memory usage

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