Mac Pro slows to a crawl performing routine tasks

I have an early dual 2.66 Dual-Core Xeon Mac Pro. For the last year or so, it's been plagued by very poor performance whenever anything of significance is going on. Some of the most blatant offenders are iTunes iPhone/iPad syncs, Time Machine backups, and certainly more strenuous things like Lightroom batch exports. Whenever something like that is going on, just opening Google in a new Safari window can take 5-10 seconds, along with beachballs, slow typing response, etc.
I've done two OS wipes hoping it was software-related, but that never helped. I've tried defragging, run extended hardware tests using the Apple tool and it found nothing. There's about 50GB of space left on my startup drive, but like I said, this happened on a new, clean install, so I'm sure it's not software. Even though there were no errors, I pulled all but two 2GB memory sticks and performance was still bad with just iTunes and Safari running during a sync. CPU usage is fairly nominal during these episodes, so it's not like something is pegging them. I have a Core Duo and Core 2 Duo MBP and they both run fine. It's not bleeding edge, but this Mac Pro shouldn't be worse than those two, and it is. I'm pretty convinced it's a hardware issue somewhere but I don't know where to go from here. Any suggestions?

I'm having the exact same problem, sluggish performance with nothing going on. I have iTunes running I'm typing in Text Edit and I get one or two words ahead of the cursor. I have to wait a few seconds for everything. Activity monitor shows no CPU hogs. I've looked into the problem being Spotlight indexing, cache files out of control, kotoeri input, any other obscure crevasse in the dark inner workings of this petulant beast I could think of. I've defragged, I've run unix maintenance scripts, repaired permissions (from Terminal, "Maybe it'll work better.") I've researched and investigated and tried everything I can think of. I'm at my wits end. Came here. This is the first confirmation I've had that I'm not insane and someone else has the same issue.
I know there have been some problems with the Radeon 2600, screen goes black and won't revive without holding one's tongue just the right way. Some have reported it eventually just not reviving. I wondered if that had something to do with things. Can't see how though. If I knew it would solve the issue for sure I'd drop the few hundred to relieve the torture, as it is I can't afford a few hundred for a "maybe."
I upgraded to Snow Leopard hoping it would resolve. At first it did. Now it's back. It comes and goes, sometimes I don't notice it, then it gets bad, then it's gone, then it gets really bad, I swear, it stays really bad, I swear some more. I have a 8-Core with 10GB of RAM and I can't use Text Edit without waiting for the cursor? Some thing is amiss.
I don't know that we'll find a solution, it seems so obscure, but misery loves company. I'll let you know if I discover a wonder fix, hoping you'll do the same.
Model Name: Mac Pro
Model Identifier: MacPro3,1
Processor Name: Quad-Core Intel Xeon
Processor Speed: 2.8 GHz
Number Of Processors: 2
Total Number Of Cores: 8
L2 Cache (per processor): 12 MB
Memory: 10 GB
Bus Speed: 1.6 GHz
Boot ROM Version: MP31.006C.B05
SMC Version (system): 1.25f4

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Hello Everyone,
I made a similar post about this subject not to long ago but now im back in the same situation. I will just recap everything that i did and hear your guys thoughts on what i did.
So to make a long story short.. I have a 2009 imac that contains all of my applications that i use on a daily basis. I then bought a 2012 12-core Mac Pro. Instead of being patient i wanted to start using this machine right away. I then set up migration assistant on both machines and literally copied everything over from my imac to my newly purchased mac pro. I later realized that this was a bad idea because it brought over boat loads of crap that was not being used (essentially 700GB) My computer was running very slow, defiantly not at speed of what a 12-core should be running at. so i started cleaning it up to the best that i could and was able to clear up 200 or so GB's. I still was not satisfied by the results i was getting. I kept getting beach balls and slow performance overall. so i went out and bought a 120GB SSD drive and figured that would be my best solution... well certainly it was at first. I then cleaned up my applications folder to clear up room in that folder. so after that was done i used migration assistant to transfer JUST the APPLICATIONS over to the SSD. After that was complete i then received a ton of crap on on the SSD. On boot up im not getting a pop up that is attached to a program i use to have on the iMac and is started to run slower than before the migration to the SSD...
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A clean install along with Setup Assistant (or Migration Assistant) really is good and important way to go.
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You can CCC the system and apps to another drifve and retain just your home library (the part that is now hidden which is annoying to some and taking too invasive into user space as if we can't and don't need access?)
~/Library
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http://eshop.macsales.com/item/Western%20Digital/WD6400AAKS/
http://www.barefeats.com/harper14.html
Great replacement - and worth every penny of $82 to avoid and fix this, and because your system will run better.
Resetting PRAM/NVRAM
http://docs.info.apple.com/article.html?artnum=2238
SMC - System Management Controller
http://support.apple.com/kb/HT1806
Most articles are easily found at Mac Pro Support
http://www.apple.com/support/macpro/
It is a good idea to insure new memory works by itself; to run Apple Hardware Test (OEM DVD boot with "D" to run Extended Test) once, too. And yes, 4 x 2GB would be better and loss of 1GB won't help enough. Still have room to add 4 x 1GB or more down the road.
You keep the four keys held down through 3 complete restart cycles before you release the keys.
If the system forgets where to boot from, which this will trigger, hold the OPTION key. Also, it should still boot but have to scan for a valid boot drive system.... which is what your problem, in part, sounds like (except for some other issues).
Yes, great on UPS and backups. But it is also "wise" for you or your department, to have some emergency boot drives (FireWire 800 is great) for repairs, maintenance and to make changes - and to rule out the drive is functioning. A bad block sector can ruin everything and cause days of fixing, when having a backup or alternate would be... your own personal "UPS" - redundancy. Some servers have redundant PSU and other components, a "spare tire" if you will.
Finder: Go to Folder (under one of the menus or just use "Command + Shift + G" and type "var/vm" will show you the location of swap files, which is normally a hidden folder. Nice to get to know a couple places where some things are stored. Also, look at Activity Monitor. Leopard seems to have more information on pageouts, VM, and swap files being used.
SmcFanControl is a little background utility that most of us use, that helps especially in summer or with some upgrade cards to keep everything run cooler, like FBDIMM RAM. The default fan rpm is 499-599 while setting it even to 799 will make enough difference to drop the temperature or keep temps below threshold.
http://www.macupdate.com/info.php/id/23049/smcfancontrol
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http://www.bresink.com/osx/HardwareMonitor.html - he knows his stuff and has contributed to discussions on system memory temps.
System Startup key commands:
http://docs.info.apple.com/article.html?artnum=303124
Long startup times:
http://docs.info.apple.com/article.html?artnum=86639
Repairing your startup drive (rather than use DVD though, much better to have TechTool Pro http://www.micromat.com )
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James:
I suspect Wizard's problems resulted from too many widgets and possibly some not quite compatible software. Slowdown can result from lack of free physical RAM, so that Virtual Memory swap files on disk have to be frequently accessed. I don't think he mentioned how much RAM is installed. His symptoms go beyond mere slowdown, however, so I would suspect other software problems as well.
Cutting way back on widgets together with restarting can work wonders sometimes.
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Apple has been packing a lot of changes into OS incremental upgrades. To interpret that as comparable to Windows Service Packs probably isn't very accurate. Yes, some bugs are fixed but there have been steady upgrades of core features. Security fixes are often included as well. But I've experienced no stability problems whatever.
Some users recommend using Combo updates instead of using Software Update. I've always used Software Update and have never had a problem. The important thing, either way, is to make certain the operating system and disk directory are 'clean' and trouble-free before and after the update.
I've never had to do an OS reinstall except once, when I was tinkering with System files and slipped up. Routine preventive maintenance works.

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I get the spinning color wheel all the time. Programs crash.
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I reset SMS and PRAM.
This machine is slow. Previous to the upgrade, this machine was very fast!
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Hardware Overview:
Model Name:    Mac Pro
Model Identifier:    MacPro5,1
Processor Name:    Quad-Core Intel Xeon
Processor Speed:    2.4 GHz
Number of Processors:    2
Total Number of Cores:    8
L2 Cache (per Core):    256 KB
L3 Cache (per Processor):    12 MB
Memory:    20 GB
Processor Interconnect Speed:    5.86 GT/s
Boot ROM Version:    MP51.007F.B03
SMC Version (system):    1.39f11
SMC Version (processor tray):    1.39f11
Serial Number (system):    YM12403QEUF
Serial Number (processor tray):    J512102JZBH8C
Hardware UUID:    331ADEF9-7672-54D4-B314-6CC9510F23F1
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Download EtreCheck from http://etresoft.com/etrecheck
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Hardware Information: ℹ️
    Mac Pro (Mid 2010) (Technical Specifications)
    Mac Pro - model: MacPro5,1
    2 2.4 GHz Quad-Core Intel Xeon CPU: 8-core
    20 GB RAM Upgradeable
        DIMM 1
            4 GB DDR3 ECC 1066 MHz ok
        DIMM 2
            4 GB DDR3 ECC 1066 MHz ok
        DIMM 3
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        DIMM 4
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        DIMM 5
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        DIMM 6
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        DIMM 7
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    Mar 26, 2015, 06:52:15 AM    /Library/Logs/DiagnosticReports/mdworker32_2015-03-26-065215_[redacted].cpu_res ource.diag [Click for details]
    Mar 26, 2015, 06:28:11 AM    /Library/Logs/DiagnosticReports/mdworker32_2015-03-26-062811_[redacted].cpu_res ource.diag [Click for details]
    Mar 26, 2015, 06:27:33 AM    /Library/Logs/DiagnosticReports/mdworker32_2015-03-26-062733_[redacted].cpu_res ource.diag [Click for details]
    Mar 25, 2015, 09:19:55 AM    /Users/[redacted]/Library/Logs/DiagnosticReports/Adobe Illustrator_2015-03-25-091955_[redacted].crash
    Mar 25, 2015, 05:40:16 AM    /Users/[redacted]/Library/Logs/DiagnosticReports/plugin-container_2015-03-25-05 4016_[redacted].crash
    Mar 24, 2015, 10:58:55 AM    /Library/Logs/DiagnosticReports/Adobe Illustrator_2015-03-24-105855_[redacted].cpu_resource.diag [Click for details]
    Mar 23, 2015, 04:52:41 PM    /Library/Logs/DiagnosticReports/Adobe Illustrator_2015-03-23-165241_[redacted].hang
    Mar 23, 2015, 04:46:35 PM    /Library/Logs/DiagnosticReports/Adobe Illustrator_2015-03-23-164635_[redacted].hang
    Mar 23, 2015, 04:45:23 PM    /Library/Logs/DiagnosticReports/Adobe Illustrator_2015-03-23-164523_[redacted].cpu_resource.diag [Click for details]
    Mar 23, 2015, 03:29:11 PM    /Library/Logs/DiagnosticReports/Canon Office Printer Utility_2015-03-23-152911_[redacted].hang

Malware – Adware removal – Apple Support
Activity Monitor - Mavericks also Yosemite
Activity Monitor in Mavericks has significant changes
Performance Guide
Why is my computer slow
Why your Mac runs slower than it should
Slow Mac After Mavericks
Things you can do to resolve slowdowns see post by Kappy

Mac Pro slow after upgrade to 10.5.5

I got a certified Mac Pro a few month ago. It worked pretty fast in the beginning but then the performance slowed down. I called the Apple support and they just told me to upgrade from 10.5.4 to 10.5.5. But now my Mac is even slower than before; especially start up time takes a while.
Also, when I do "Disk Utility – Repair Disk permission" I get these errors now:
OwnerGroupTool" has been modified and will not be repaired.
Warning: SUID file "usr/bin/lppasswd" has been modified and will not be repaired.
Group differs on "private/etc/cups", should be 0, group is 26.
Permissions differ on "private/var/spool/cups/cache/rss", should be drwxr-xr-x , they are drwxrwxr-x .
Can anyone help?

Hi and thank you very much for all your suggestions!
I'm really not a Mac expert. In my company we always had a technican. Now I'm working from home and need to deal with the technical stuff by myself. So please forgive me my answers below:
Run Disk Warrior.
OK – I don't have this program but I guess it is worth to buy (?)
Clone your drive with SuperDuper or Disk Utility Restore.
I found Disk Utility Restore. It says to copy a disk, drag the it from the list on the left. Should I drag the HD symbol in the destination field? What does actually happen when I clone my HD?
Never repair permissions booted from an older version,, that includes not using the OS X DVD, it will not set permissions properly.
OK – thanks
What do you mean by slower. Just startup? how many boot drives are connected? and have you reset startup disk? do you have Windows installed?
Yes starting up is slower, but funily not always. And the general handling in programs. It's not so slow that it would bother me a lot. I just wondered if I could have the performance how it was in the beginning.
One boot drive; I guess.
No, I haven't reset startup disk. How do I do this?
No Windows installed
What did you change or install (hardware or software) at the time it slowed down?
Just the update to 10.5.5
Always keep a backup copy you can boot from before you apply updates so you can go back easily to 10.5.4.
Thanks – I didn't do this
Make sure you have an alternate boot drive used just for doing maintenance and repairs where you can run Disk Utility, Warrior, TechTool Pro. I would also delete manually the two top level /Library/Caches folders along with extensions.mkext.
Sorry – What exactly is alternate boot drive?
Some messages from Disk Utility can be ignored.
Are some messages serious?

Mac pro slows down after RAM uppgrade ASP (its my workstation)

I have an mac pro (first 8core released back in 2007) and i uppgraded it from 4 to 8 gig of ram. After the upgrade it became slower so I installed snow leopard since it should handle ram and multicores better but that didnt help. Its like it go from sleepy to extreme slow. Like an photoshop image that should take 12 seconds to load took 10min!! So its somethin fishy.
The old configration
DIMM Riser A/DIMM 1: 1 GB
DIMM Riser A/DIMM 2: 1 GB
DIMM Riser B/DIMM 1: 1 GB
DIMM Riser B/DIMM 2: 1 GB
DIMM Riser A/DIMM 3: 0 GB
DIMM Riser A/DIMM 4: 0 GB
DIMM Riser B/DIMM 3: 0 GB
DIMM Riser B/DIMM 4: 0 GB
The new uppgraded
DIMM Riser A/DIMM 1: 1 GB
DIMM Riser A/DIMM 2: 1 GB
DIMM Riser B/DIMM 1: 1 GB
DIMM Riser B/DIMM 2: 1 GB
DIMM Riser A/DIMM 3: 2 GB
DIMM Riser A/DIMM 4: 2 GB
DIMM Riser B/DIMM 3: 0 GB
DIMM Riser B/DIMM 4: 0 GB
Does 2007 have 4 memory chips as ideal as 2006 had? Can the macstore give me bad compatible rams (i asked for orginal mac ram memmorys). If this could make it go slow. Mabe snow leapord helped out to slow it down but I worked one and half day before I uppgraded to snow leopard and it was already slow.
This is on my worskstation so its Asp. Is there any heros here?
(ok I will test to take out the ram and se if everything goes back to normal but still I would like to get it to work)
Cheers
Joel

"need" is something that is "recommended" for symmetrical memory performance.
It shouldn't run any different really.
I always recommend this:
try with just the new RAM
put highest density in A1:A2
It is symmetrical, sort of, as 4x1GB in slots 1:2 on both Risers.
My take: doesn't play nice or get along with original 4GB; marginal; and ideal is 4 x 2GB; second best 8 x 1GB. 6 DIMMs is the worst configuration AFTER not having enough.
I'd wipe out your swap files; clone your drive - if you haven't done so in six months you should, also if moving to a new OS, DEFINITELY either
Clean install on new/2nd drive (great excuse for new fast drive);
Clone and then upgrade (worst scenerio)
Clean install followed by running Migration Assistant for everything except applications.
Don't want to have issues with new OS, new drivers, AND new hardware (even RAM) and a new OS isn't going to fix a problem, just add new ones. And TEST a new OS before you commit yourself (reason for backups and clones and the like).
Also, run Disk Warrior on fresh clone before you use it.
What you do, why, you probably did need more RAM, 4GB is pretty basic and not even enough for pro apps like graphic editing.
Watch RAM temps and run AHT Extended Loop briefly.
I'd watch for bad blocks and disk sectors; re-initialize drives, even install some new ones: WD 10K V-Raptor for system and another for scratch; Samsung 1TB F3 for data.... something like that if it has been 2+ yrs.

Mac Pro Slower after adding second hard drive

My work computer is a Mac Pro 3,1 running Lion 10.7.3 with 4GB RAM and a 1TB hard drive. It was performing well running programs like Adobe CS5 and Final Cut Pro until I added a second 1TB drive (Western Digital WD1001FALS). After that upgrade Photoshop is way slower while programs like InDesign and Final Cut are noticable slower.
Is there any reason for this? Anything that can be done outside of a memory upgrade?

Let me try to direct you to some tips on CS5, and suggest that more hard drives properly used (OS, scratch, data, backup, array) can help, but that one drive and 4GB RAM is under performing.
Optimize Photoshop CS5
Optimizing Photoshop Overview
Adobe Photoshop FAQ
Optimize performance Photoshop
What are you using the WD1001FALS for? data? scratch?
And open Activity Monitor and check pageouts. Unless your use if very very light, I can't see that as being enough for even CS5 code and some OS X let alone any more apps.
Activity Monitor memory usage

Anyone using a 12 Core Mac Pro? I have HORRIBLE performance issues .. Help!

After the latest 10.7.4 Mac OS X update I have extremely horrible performance issues with AE ... and they were not so great before the update.
It is still stabilizing ... but an 1:19 clip in SD is taking 12 HOURS TO analyze and stabilize. !!!
The 12 cores are barely being used and this problem has been an issue since I purchased the suite over a year ago.
Does anyone else have problems using AE on their 12 CORE MAC PRO?
REPLY ONLY IF YOU HAVE A 12 CORE MAC PRO PLEASE.
There must be a problem because since the update ... Adobe Encore is PERFECT .. and ALL 12 CORES MAX OUT and the encoding is quick!!
I also have major problems between PP and AE using Dynamic link .. and slow renders in PP.
Everything else works fine .. other apps / other vendors.
I am calling Adobe today.

Thank you for your time.
I am using a 12 Core 2.93 GHZ with 32 GB RAAM and a NVidia GTX 285.
I also have a Areca 1212 PCI RAID Card. ( NOTE: I HAVE A SERIOUS RAID DRIVER PROBLEM NOW. THE RAID IS DISCONNECTED )
Mac OS X 10.7.4
Adobe Master Suite 5.5
The Apple "Console" app logs a whole lot of these three Adobe related errors:
1. 5/18/12 2:10:16.260 AM aeselflink: CFURLCreateWithString was passed this invalid URL string: '/System/Library/Frameworks/System.framework' (a file system path instead of an URL string). The URL created will not work with most file URL functions. CFURLCreateWithFileSystemPath or CFURLCreateWithFileSystemPathRelativeToBase should be used instead.
2.) 5/18/12 2:10:16.331 AM aeselflink: -[NSMenu menuID]: unrecognized selector sent to instance 0x1183100e0
5/18/12 2:10:17.333 AM aeselflink: -[NSMenu menuID]: unrecognized selector sent to instance 0x115625740
3.) 5/18/12 2:11:18.596 AM [0x0-0x9b09b].com.adobe.aerendercore: You have at least one output module template that refers to a missing output plug-in. Please check your Output Module Templates.
Only half of my hyperthreaded processors are active when using AE "Warp Stabilizer". This issue was addressed before in the Forums. There was no solution. I dont' know if it is any better in CS 6.
Also the automatic saving of all linked compositions while using the dynamic link feature bewteen PP and AE causes huge inoperatable waiting times .. unbearable. My guess is that the new "Global Performance Cache " fixes this ... which I consider update to a terrible problem .. but they sell it as a feature ( Ill go into that later.
Question:
What RAID card are you using?
Do you use the Warp Stabilizer?

Mac Pro slow write speed on Samsung SSD drive

Hi,
I am wondering why I get very slow write speeds on my Samsung SSD 840 Series 250 GB system startup drive in my Mac Pro (early 2008).
I get an average write speed of approx. 35 MB/s and not much more for top speed. I tested it by transfering a large file (8GB, .m4v) from my Mac Pro internal Raid 0 (4x 2TB Stripe Set) delivering up to 550 MB/s. The read speed of the SSD is around 270 MB/s which I consider to be OK for that I have just the 3 Gb/s internal SATA interfaces in my pretty outdated Mac Pro.
I don't see any Memory or CPU overruns or consuming system tasks while doing the tests and no other user programs except Activity Monitor is running. The following screen shots from the Activity Monitor should proove my findings:
Setup:
Samsung SSD 840 Series 250 GB (SATA 6Gb/s and 3Gb/s compatible) system startup drive. Free Space left on SSD is around 100GB of 250GB.
Mac Pro (early 2008, Model 3,1), 2 x 2.8 GHz Quad-Core Intel Xeon, 8 GB RAM, NVIDIA GeForce 8800 GT 512 MB.
OS X Mavericks 10.9.1
Samsung sais there should be 540 MB/s for Seq. Read and 250 MB/s for Seq. Write for their SSD drive.
Any hints what could be done to increase especially that low write speed of around 35 MB/s (average) on the SSD in my Mac Pro?

Really great 'The hatter' !!!
Thanks a lot for your exceptional support.
Next to my 4x discs in the 4 SATA II drive bays I have installed a additional OWC drive kit that allows me to have another 2 disks sitting in the empty bay below the CD/DVD drive and those are connected to the motherboard. So there is a lot to handle for that controller you mentionned ;-)
I will follow your guidance and boot from my 'maintenance' system on direct attached external drive, install the TRIM Enabler there as well and do the DU repair run. I always have a separate system available that gives me the chance to boot my Mac from there. And in addition I regularly use ONYX to keep my OS X clean and do the maintenance.
Anyway, you're the man of the day!
PS; I am looking forward to finally receive my new Mac Pro (late 2013) ordered on the 18th of December one of these days and then I hope that I can fly ;-)

Mac Pro slow vs. iMac?

Hello:
I have the early 2008 Mac Pro (2.8GHz quad) with 10GB total ram and I am really perplexed because when I went to Frys yesterday to play around with an iMac (2.8GHz core duo) with only 2GB ram, I found that this iMac opened up programs and was so much more speedy than my Mac Pro.
I am really bothered by how fast the iMac seemed compated to my Mac Pro because I though I had a system with superior specifications, but it seems to open up programs much slower than the iMac.
How can I be sure that my Mac Pro is functioning as it should? The 8GB (4 x 2GB) extra ram I bought for it is aftermarket . Do you think that this could be the problem?
Thanks,
Derek

More often it is migrating the system or something else. I doubt you could see the 4% difference even if you got the wrong slower memory, and unlikely OWC would do that.
http://www.barefeats.com/harper5.html
http://www.barefeats.com/harper.html
http://www.barefeats.com/harper7.html
http://discussions.apple.com/thread.jspa?threadID=435350&tstart=0
And of course you want the best of drives rather than just original.
http://www.barefeats.com/harper9.html

Mac Pro slow start up

I got a problem with my Mac Pro 4.1, when I turn on the mac the chime sounds after 20 - 30 secs and later on the white or gray screen appears. I had reset the PRAM, changed the coin battery, tested with the "Apple Hardware Test" (no problem at all). I have 20Gb (4X4GB, 4X1GB) of Ram, five hard drives attached to it. I thought that the problem was the hard drive with the OSX (10.8.2), got changed with a new one with a new OSX on it, two hard drives of 2Tb with RAID "lvl 1", two hard drives of 640Gb. When my mac goes to sleep, sometimes when I try to wake it up I hear the sound that wokes up but got no image on display, so I have to force shut down and then turn it on again.
I try dettaching all the hard drives except the one that has the OSX, thought it might be problem of the RAID. I did experiment that my mac freezed and then restart.
Please someone help me with this problem!
Specs Mac Pro 4.1
- 2.26ghz x 2 "8 - core"
- 20gb ram (I recently upgraded my ram from 6Gb)
- 1Tb HDD
- 2Tb HDD x 2 (RAID 1)
- 640Gb HDD x 2
- NVIDIA GT 120 x 2
- OSX Mountain Lion 10.8.2
Sorry for my english that is not so good.

Snow Leopard seems to be the most solid OS.
SSDs can be iffy.
Anyone's RAM can cause or be a problem.
But you said it started before those.
"problem with the hard drive..." is too general and really rare. You would have to have bad sectors or something and not been able to map those out. Any drive can ship that way (not just mapped out at the factory). Zero all from Disk Utilty is not guarantee to resolve those.
Also rare to have a clone not work, SSDs being likely candidate and finiky.
Using Cloning as a Backup Strategy
Carbon Copy Cloner 3.4.1
http://www.bombich.com/software/updates/ccc-3.5.html
OS X Lion Install to Different Drive
How to create an OS X Lion installation disc MacFixIt
Migration Assistant Update for Mac OS X Snow Leopard
Mac OS X: Starting up in Safe Mode - http://docs.info.apple.com/article.html?artnum=107393
What is Safe Boot, Safe Mode? (Mac OS X) - http://support.apple.com/kb/HT1564
Safe Boot takes longer than normal startup - http://docs.info.apple.com/article.html?artnum=107394
Mac OS X 10.4, 10.5- Computer shuts down during Safe Boot - http://support.apple.com/kb/TA24054
If you don't have an installer disc available you can try effecting repairs using fsk in Single User Mode - http://docs.info.apple.com/article.html?artnum=106214.
Post by japamac about using fsk - http://discussions.apple.com/thread.jspa?threadID=1649143
Repairing permissions in Single User Mode - http://discussions.apple.com/message.jspa?messageID=7117122
Mac Running Slow: General Tips & Advice (Kappy)
https://discussions.apple.com/thread/4214422?

Mac Pro slow to connect to internet after waking

Since I upgraded to Lion my mid-2011 2.8 GHz Mac Pro takes about 10-15 seconds to connect to the internet. After waking from sleep in the past, I could launch my web browser and it was connected immediately. It is bad for my email. It is set to check every 2 minutes and I get a huge log of connection errors. I am using the ethernet port with a direct connect to the modem. I also have a wireless router for my MBP and it connects immediately through Airport. Why is my direct connect slower than Wi-Fi?

Sometimes if you set your Ethernet connection to Automatic, rather than specifying the speed you know it will connect at, it will spend several seconds re-negotiating speeds, duplex, flow control, etc with the connected equipment.
For fastest wake times, know what speed it will ultimately settle on, and set that as the speed it should use.
System preferences > Network > Ethernet > ( Advanced ) > Ethernet ...
set Manually: speed, duplex, and frames size.

Mac Pro slows to a crawl performing routine tasks

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