Mac pro too slow to use, spinning ball, no finder response, only hard power off, installing system stalls at 18 minutes left.

mac pro too slow to use, spinning ball, no finder response, only hard power off, installing system stalls at 18 minutes left.
It is taking an hour to power up and mac apple logo appear onscreen. No finder controls or "clicks" are being recognized. Spinning beachball all the time.
Using hard power off and holding the mouse down, I was able to open the optical drive and then restart with "c" and ask the dvd to reinstall the system, but it has stalled before finishing the installation.
This happened about 4 days ago, first it started responding slowly, and then it just keeps spinning the beachball. I can't find hardware test. I did run etrecheck, it did not have any error messages, but I can't copy or move the data anywhere.... I am not able to access the mac pro with another machine, and now I am stuck in install freeze, so I can't copy etrecheck by hand onto a piece of paper.
Without being able to finish a reinstall, what can I try?
After it got bad, and before it got REALLY bad, I managed to repair permissions, but it took a long time. Most of a day. When I restarted from that, things were only worse.
Mac Pro 1,1 , 11 GB ram, 7300, 5TB hard drives, OS 10.6.8,  the drive containing the system folder is/was 700 used, 290 free. While I could get commands to respond, I put Activity monitor on the desktop and watched it.  System memory was 3.31 GB used, about 7 free, and some wired. No app was using a huge amount.
what should I try next? I put a bid on a new/old machine so that I could move the 4 hard drives over.

Thank you for all your suggestions. Please correct me as I articulate this.
I have three versions( 5, 6, CC) of the Adobe Master Collection which I keep active for different clients. I have final cut and motion. I have Office 365. I have a collection of graphic apps that are individually not too big but in all, my app folder is 65GB and my bootcamp partition is 61GB. I can't fit all this on 120 ssd and a 256 will be full once I install, correct? drives should be half open?
Somehow I did not make it clear enough that I was trying to copy onto a 2TB drive I had just initiallized in order to try and save files from my startup drive. I don't use time machine. I take a day or a few days worth of documents and physically move them to another drive at night.  If a series is finished I make two dvd's as well. The second black drive that was failing was the drive I moved my backup documents onto. At no point was I trying to backup onto the failing drives. I was trying to copy off both of them onto the other two drives, a third aux backup that has been there for a while, and a newish 2 TB which I designated as the startup drive when all this trouble started.
I wondered if there were any good techniques for trying to get the data off the failing drive. Thanks for the suggestion of Data Rescue 3. I don't have it yet, but I will try it as soon as I get it. I was never trying to repair in place.
I am very interested in getting a pci bracket and an ssd, but I may wait until I can afford the larger one. If I get an older bracket that is compatible with my old mac pro 1,1  ,  I'd like to be able to move it to a mac pro 3,1 if I get one. Will the larger ssd drives be compatible with the sata in a pci bracket that can work in my mac pro 1,1 ? sata 2 versus something else? If 240 or 256 is my size limit, how much more than my 65 and 61 GB partitions can I put on there? How much of a scratch disc can I make if I leave another 39 GB of headroom on my bootcamp partition? I'm filling 165 GB without making any allowance for temp files.
You have said that 120 is enough for any system. I think I must be misunderstanding something. Are you saying that assuming that most people run office and photoshop and maybe lightroom?
I have and use 4 HDD in this machine, mostly for document storage in two places.
I took out all but the group of 2GB ram chips I bought a year and a half ago. The old ram had passed the hardware test the last time I had access to the hardware test. Two black drives failed, one was a year old and one was a year and a half old, and that it may have been exacerbated by the heat wave. I don't know why the video and the monitor were affected save that the startup drive was failing. I am trying to replace the card.
With all this said, I am also looking at a used mac pro 3,1 with a better video card since a newer machine will likley be compatible through another OS upgrade. If a machine costs only a little more than a new card, it might be a better way to go.
I don't have any sources that offer an ssd for 100. ( of a size that is useful)
How large is your application folder?

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    Unless I can fix something I will have to return to an older version, Im actually thinking of going back to 3.6 which worked fine on my machine - AMD E2, Dual Core graphics, 4gm RAM.
    Please help.

    The queries are the same across all three database platforms and have been examined by our dba's and run through SQL Server optimizer to get the access path. All queries are very simple...the system was originally written in Btrieve. It is "record at a time" in nature. The program that does the screen refresh does three seperate queries...all something like, select * from tablename where key = 'abc'. The program then combines the data into a single record and returns the results. Like I said...SQL Server 1 second. Each of the three tables has 30,000 records, all with unique keys. The data returned to the application is probably 50 records, each 200 bytes...all character data. All tests were done with the same workstation on the same LAN....I don't think LAN latency is the problem here. Using other query tools, the response back is good, as expected.
    Another example...at application startup, we load all of the metadata (columns, primary key segments and index segments) into memory using the standard odbc api calls...SQLColumns, SQLPrimaryKeys and SQLStatistics. SQL Server loads this in maybe 8-10 seconds while Oracle loads in 15 minutes at best. These queries we don't control and it is still unbelievably slow. Again, using the ODBCTEST utility, the results for these api's come back pretty quick.
    If it is our application causing the problem in some way then it should be equally slow across all platforms, right?
    By the way, we had one of your Oracle Consultants in house trying to solve the metadata problem and he was unable to find any problem in our application and had no answers for us.
    Thanks for the quick response.
    Lon Diehl

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