Mac Pro will not reboot after Bootcamp attempted installation

I have an older quad-core 2009 Mac Pro. I tried to install Bootcamp before realizing that it's not supported. Now the Mac Pro will not reboot.
It starts up fine. It shuts down fine. But it just will not reboot. When I try to reboot, it just clicks like it's trying to boot to a DVD or a drive that's not there (I have since formatted the drive I was using for Bootcamp and use it for Time Machine now).
This is what I have tried:
- PRAM reset
- SMC reset
What could be keeping my Mac Pro from rebooting properly?? Please help. Thank you!!

So you tried with Mac and Windows on same drive?
And you have Recovery partition.
You made a clone with CCC as well and cloned the Recovery
Paragon makes a couple programs to make life easier.
And, Well, Boot Camp works. There are unwritten rules. There is a forum devoted to it.
2009 is not old. Old is pre-2008 due to UEFI / EFI64 and how Windows 64-bit now looks during install.
It did install but the drivers and updates and such might be an issue.
Apple does not support HFS arrays, not just that Windows won't install but to mount, their Apple HFS driver.
You left out so much and maybe your IT didn't include Windows on Mac.
www.apple.com/support/bootcamp
In general pull all your drives during install except that one Windows will be installed on.
Do get video driver from ATI etc yourself
Tell us what version, I assume Windows 8 which works fine other than a few issues - more with MacBook series and iMac or Mac Mini lines.

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Hi all,
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Message was edited by: macjack

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I have an Early 2009 Mac Pro system (Mac Pro 4,1) and I've had this system for 3 years already and have been working under OS X with this system ever since I purchased it.
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For the record, I am running all the latest software builds on the OS X side (10.7.4, not that it would really matter at this point). I have also disconnected all unnecessary equipment in a trial and error scenario but the results are still the same.
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The full specification of the computer and all connected equipment are as follows:
2009 Mac Pro (4,1) 8-Core
2x Intel Xeon Nehalem 2.66GHz Quad-Core CPUs
16GB DDR3 ECC 1066MHz RAM (Apple Branded)
Two OWC 120GB SSDs (One for OS X, the other for Windows 7 x64) - These are in place of my optical drives.
4x 2TB WD Black Hard drives for storage.
Two Samsung P2350 Monitors connected via DVI. (One using a Mini Displayport to DVI adapter).

In Windows I am using the latest (12.4) Catalyst Software Suite, 64 bit of course, downloaded directly from AMD's site after installing the drivers from Boot Camp.
As for installing Windows I used an original (not burned) installation media (Disk is in a pristine condition). And yes, Windows is fine, the problem just seems to be getting the system to boot up Windows with that second monitor. However if the "problem monitor" is disconnected the system boots fine 100% of the time and connecting it later after booting the system will still operate properly.
For the sake of arguement I swapped monitor cables and connected the "second" monitor to the mini displayport adapter to verify that it wasn't a cabling issue and I'm still yielding the same issues.
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