MacBook Pro hard disk upgrade shows question mark folder

I recently bought a 1TB hard disk for my teenaged daughter's MacBook Pro.
I formatted it, used Carbon Copy Cloner to clone the existing drive. I even made sure to create the recovery partition.
I restarted while holding the option key and chose the new drive.  It booted fine so I checked in System Preferences to make sure it was selected as the boot device.
I opened the case and swapped the drives. Put it back together and restarted only to see the question mark folder!
I tried booting while holding the option key and now I get the choose a network prompt.
I am desperate and hate the thought of disappointing my daughter. It used to be that I was her hero who could fix anything now I'm the guy who asks too many questions and doesn't put enough money on her debit card. Granted she busts her butt getting awesome grades and I was upgrading her drive so she could continue her video yearbook for her school. So I shouldn't complain but it would be great to be her hero again.
BTW, I am not a newbie to the tech world but I don't do nearly as much in the Apple arena as I do in the PC world.  Then again I've been a senior tech in the industry sine before IBM had a PC.  In fact, my first real work was on a 6502 processor that used the same machine code as the Rage of the day, the Apple ][. All that to say I usually can find my way around a problem but this one has me stumped.
I appreciate any assistance offered.
Thanks,
Thom

I tried to reboot with the option, command P. And R keys pressed.  I heard the ding several times it still showed the question mark!  I also tried the shift option and it only displayed the network selection. Also I tried to press C so I could boot from USB and it didn't work either.
If I cannot get this to work I fear my only other choice is to use a FireWire enclosure. This isn't a good option as my daughter does mostly movie work and iMovie has this terrible "feature" that forces all movies to be stored in one place. It sure would be handy if it allowed movie projects to set the storage location individually.  I suppose I could simply move all the movies to the drive and try to find a way to point all iMovie projects to the external drive.
Unfortunately,  my daughter is one of those Mac users who isn't savvy enough to use anything but the default settings. Heck I've tried to explain to her that she ought to get rid of the big files once she has done her work.  That's why her drive is always full.

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