MacBook Pro with 2 HDs and 2 Mac OS X installs, possible conflict?

I have just installed an SSD drive in replacement of my optical drive in my MacBook Pro. On the new drive, I did a fresh Mac OS X install and kept the old Mac OS X install on the old, original HD. I intend on formatting the old HD eventually, but I wanted to take my time to move files to the new HD manually.
I am experiencing issues with the fresh Mac OS X install on boot and only on boot. The new SSD drive has been selected as the default booting device.
On boot, I'll be greeted with either :
The prohibitory sign (circle with diagonal line), which will flash for a couple of seconds before booting Mac OS X from the old HD
A spinning wheel, which will turn for a couple of seconds before booting Mac OS X from the old HD
A spinning wheel, which will spin forever
If I boot in HD boot selection mode or whatever (holding Alt on boot), I am able to select the drive I wish to boot from and Mac OS X will boot flawlesly in a matter of seconds.
Is it possible that 2 Mac OS X installs on different HDs could cause such a conflict? Could formatting the old HD solve this issue?
Thank you!

I have just installed an SSD drive in replacement of my optical drive in my MacBook Pro. On the new drive, I did a fresh Mac OS X install and kept the old Mac OS X install on the old, original HD. I intend on formatting the old HD eventually, but I wanted to take my time to move files to the new HD manually.
I am experiencing issues with the fresh Mac OS X install on boot and only on boot. The new SSD drive has been selected as the default booting device.
On boot, I'll be greeted with either :
The prohibitory sign (circle with diagonal line), which will flash for a couple of seconds before booting Mac OS X from the old HD
A spinning wheel, which will turn for a couple of seconds before booting Mac OS X from the old HD
A spinning wheel, which will spin forever
If I boot in HD boot selection mode or whatever (holding Alt on boot), I am able to select the drive I wish to boot from and Mac OS X will boot flawlesly in a matter of seconds.
Is it possible that 2 Mac OS X installs on different HDs could cause such a conflict? Could formatting the old HD solve this issue?
Thank you!

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