Magic Mouse Stops Clicking Momentarily

Magic Mouse with new MBP and Thunderbolt display.  Frequently thoughout the day clicking and scroll will stop functioning.  The cursor will move just fine.  If I wait about 5 seconds or so, it will start working.  If I don't want to wait, I can usually hit an arrow key on the keyboard or other key and it will start working again.
This seems to only happen when using the external Thunderbolt Display, but I use it with MBP lid closed.   Its almost as if it loses focus.  Also I think related, when my screen is locked (again with MBP lid closed)... I don't get screen saver on the External display, just black.  When I come back, I won't be able to see the login box, I have to move the mouse... then type my password all in the blind.  Once password is in, the screen come back on the Thunderbolt External.  None of this happens with just using the MBP without external display.
Maybe I should also post to the Display section.  All firmware etc. is up to date.  Tried the PRAM reset etc.
Rayo

What happens if you use it without the MB having the lid closed?

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