Mail 6.2 IMAP account removes messages from server

I've been running Mail fine for years but when I upgraded the Macbook Pro from Snow Leopard to 10.8.2 Mail began to remove messages from my mail server even though it is an IMAP account.
It is set to keep copies for offline use.
The exact same setup works fine on Snow Leopard in the iMac.
There are no plugins in Mail on the MBP/ML setup.
Have I missed some obvious setting?

Update - Attempted the following to resolve with no success:
Shutdown and restart Mail
Restart MacBook
Disable and enable Exchange account
Monitored the Activity window and everything looked OK.
Review with Connection Doctor.  An interesting observation of the Detail screen of Connection Doctor is that I did not see any activity for my Exchange domain.  Activity was listed for all other email accounts except the Exchange account.  Hmmm......
Finally had to remove the Exchange account and re-create it.  Only then did the recent and other email appear.
Arrrrgggghhhh......

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    WROTE May 10 07:42:58.612 [kCFStreamSocketSecurityLevelTLSv1SSLv3]  -- host:plus.smtp.mail.yahoo.com -- port:465 -- socket:0x7fd412286df0 -- thread:0x7fd4122918c0
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    WROTE May 10 07:42:59.068 [kCFStreamSocketSecurityLevelNone]  -- host:plus.pop.mail.yahoo.com -- port:110 -- socket:0x7fd412581e70 -- thread:0x7fd411b25c80
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    Build Version: 2
    Project Name: MailViewer
    Source Version: 7530100
    PID: 819
    Thread: 6
    Exception: EXCBADACCESS (0x0001)
    Codes: KERNPROTECTIONFAILURE (0x0002) at 0x00000005
    Thread 6 Crashed:
    0 com.apple.CoreFoundation 0x908196a9 CFHash + 17
    1 com.apple.CoreFoundation 0x908195ed __CFDictionaryFindBuckets2 + 91
    2 com.apple.CoreFoundation 0x90821405 CFDictionarySetValue + 165
    3 com.apple.MessageFramework 0x9a034236 _selectMailboxIfNeeded + 255
    4 com.apple.MessageFramework 0x9a0349ad -[IMAPOperationCache _performCopyOperation:withContext:] + 120
    5 com.apple.MessageFramework 0x9a035e8c -[IMAPOperationCache performDeferredOperationsWithConnection:] + 684
    6 com.apple.MessageFramework 0x99fa62bd _getPotentialConnectionForMailbox + 1052
    7 com.apple.MessageFramework 0x99fa59e1 -[IMAPAccount connectionForStore:delegate:options:] + 288
    8 com.apple.MessageFramework 0x99fa5819 -[LibraryIMAPStore connection] + 66
    9 com.apple.MessageFramework 0x99fa54e7 -[LibraryIMAPStore openSynchronouslyUpdatingMetadata:] + 204
    10 com.apple.MessageFramework 0x9a09c121 -[LibraryIMAPStore _fetchForCheckingNewMail:] + 47
    11 com.apple.MessageFramework 0x9a09c223 -[LibraryIMAPStore checkNewMail] + 41
    12 com.apple.MessageFramework 0x99fd31cf -[IMAPAccount fetchSynchronously] + 118
    13 libobjc.A.dylib 0x90a5bd76 objc_msgSendv + 54
    14 com.apple.Foundation 0x92801422 -[NSInvocation invoke] + 932
    15 com.apple.MessageFramework 0x99f998d0 -[MonitoredInvocation invoke] + 128
    16 com.apple.MessageFramework 0x99fa3914 -[InvocationQueue _drainQueue] + 517
    17 com.apple.Foundation 0x927fa39c forkThreadForFunction + 123
    18 libSystem.B.dylib 0x90024227 pthreadbody + 84
    chris-norloffs-computer:~ chris$ ls -1 /Library/InputManagers /Library/Mail/Bundles ~/Library/InputManagers ~/Library/Mail/Bundles
    ls: /Library/InputManagers: No such file or directory
    ls: /Library/Mail/Bundles: No such file or directory
    ls: /Users/chris/Library/InputManagers: No such file or directory
    ls: /Users/chris/Library/Mail/Bundles: No such file or directory
    chris-norloffs-computer:~ chris$
    -------------------------------------------------------------------------------- ------------------

    Many thanks for the help.
    Hi, BDAqua,
    No, no 3rd party or Internet Helpers, BUT I did load Adobe Creative Suite 2 (Photoshop, Illustrator, and other apps to make me smarter, faster, and more handsome. It had some automatic updater functions, and given that Mail and Safari suffered catastrophic failures I believe they put some hooks in there).
    I've since unloaded the Suite -- I should know better than to load an entire suite. Also, I now have 23GB of space on my harddrive, and wonder if I ran out of room during the install. There was no error, but CS2 comes on 4 DVDs so I wonder ...
    Hi, Mulder,
    I deleted the cache files - lots of stuff. I deleted two of the other files (didn't have downloads.plist).
    Unfortunately, Mail still dies when it checks for mail in the IMAP account.
    Date/Time: 2008-10-17 07:50:23.444 -0400
    OS Version: 10.4.11 (Build 8S2167)
    Report Version: 4
    Command: Mail
    Path: /Applications/Mail.app/Contents/MacOS/Mail
    Parent: WindowServer [680]
    Version: 2.1.3 (753.1)
    Build Version: 2
    Project Name: MailViewer
    Source Version: 7530100
    PID: 844
    Thread: 6
    Exception: EXCBADACCESS (0x0001)
    Codes: KERNPROTECTIONFAILURE (0x0002) at 0x00000005
    Thread 6 Crashed:
    0 com.apple.CoreFoundation 0x908196a9 CFHash + 17
    1 com.apple.CoreFoundation 0x908195ed __CFDictionaryFindBuckets2 + 91
    2 com.apple.CoreFoundation 0x90821405 CFDictionarySetValue + 165
    3 com.apple.MessageFramework 0x9a034236 _selectMailboxIfNeeded + 255
    4 com.apple.MessageFramework 0x9a0349ad -[IMAPOperationCache _performCopyOperation:withContext:] + 120
    5 com.apple.MessageFramework 0x9a035e8c -[IMAPOperationCache performDeferredOperationsWithConnection:] + 684
    6 com.apple.MessageFramework 0x99fa62bd _getPotentialConnectionForMailbox + 1052
    7 com.apple.MessageFramework 0x99fa59e1 -[IMAPAccount connectionForStore:delegate:options:] + 288
    8 com.apple.MessageFramework 0x99fa5819 -[LibraryIMAPStore connection] + 66
    9 com.apple.MessageFramework 0x99fa54e7 -[LibraryIMAPStore openSynchronouslyUpdatingMetadata:] + 204
    10 com.apple.MessageFramework 0x9a09c121 -[LibraryIMAPStore _fetchForCheckingNewMail:] + 47
    11 com.apple.MessageFramework 0x9a09c223 -[LibraryIMAPStore checkNewMail] + 41
    12 com.apple.MessageFramework 0x99fd31cf -[IMAPAccount fetchSynchronously] + 118
    13 libobjc.A.dylib 0x90a5bd76 objc_msgSendv + 54
    14 com.apple.Foundation 0x92801422 -[NSInvocation invoke] + 932
    15 com.apple.MessageFramework 0x99f998d0 -[MonitoredInvocation invoke] + 128
    16 com.apple.MessageFramework 0x99fa3914 -[InvocationQueue _drainQueue] + 517
    17 com.apple.Foundation 0x927fa39c forkThreadForFunction + 123
    18 libSystem.B.dylib 0x90024227 pthreadbody + 84

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