Mail: a curiosity about Smart Mailbox

Hi
as mentioned before, I'm migrating my email from Entourage to Mail and would like to "maintain" some search rules structure. Moving to Mail, I don't find a "parameter/feature" creating searching rules:
When I specify a mailbox to search in (i.e. "Message is in Mailbox"), the search is limited to only this mailbox and not to its "child". This means that if I have a structure like this
Inbox
|
+-- pippo
+-- pluto
and I specify just Inbox as "Message is in Mailbox", the search is performed only in Inbox and not into Pippo and Pluto. I need this feature because I have to exclude in the search an imported mailbox with a lot of sub-mailbox.
Thank you for the support
Daniele

Sounds like you know what you are doing, but just in case...
Smart Mailbox is a virtual view into your inbox and your archive mailbox.  Your description of moved emails still showing up in your smart mailbox makes sense since it doesn't care what maiblox the emails are moved from.  You can add additional rules to filter out inbox vs archive so you only see new messages from those contacts, but I'm guessing you probably already know this (but just checking in case this is easily solvable).
As for the behavior of select all move to archive forcing already archived emails to vanish you are correct that it sounds buggy.
If your email is Gmail they don't treat archives the same way most IMAP email servers work so you may need to investigate further.
If you can set up your smart mailbox to exclude already archived emails you can probably just avoid this issue all together.
G'luck

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