Mail search not working after clean install of 10.5.4 on new 20" iMac

Apple Mail search is not working. Search on "subject line" works, but search on "entire message" does not. For example, searching with "parking" yields NO results, and there are many messages with the word "parking" in their body in the mailboxes. It happens with both "In Box" and "All Mailboxes" checked.
What's going on?
I did a clean install of Mac OS X on a 20" iMac using the Install disk shipped with the machine. Then I ran Software Update. Still, the problem happens, on a clean baseline system.
Argh.

I've had this problem since Tiger. Various solutions have been posted, but none have worked for me. It really cripples Mail--I've used emails as my personal database for years, kind of a history log, which worked great in Eudora but Eudora isn't being supported anymore.
After updating to X.5.5, I can search "entire message" for "All Mailboxes" and find everything including emails in the mailbox I was viewing (often finds 60,000 occurences, but doesn't take very long--it's just incredibly tedious to find the one I want from such an enormous set of results). I can also find everything using Spotlight, outside of Mail. But if I am looking at any mailbox, like Inbox, search "entire message" never finds anything at all. Searching for subjects etc works fine.

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