"mail" server access info and messages deleted

Earlier today through an errant instruction, the server access info for Mail 4.6 was inadvertently deleted.  This process also deleted all the messages viewable in
Mail's mailboxes: In/Sent/Trash !
From Time Machine, I restored the server access information and the deleted messages!
All of the restored messages now appear as nnnn.emix (as expected) in Home/Mail/POP email address/INBOX.mbox/messages.  Similarly for Sent Messages & Deleted Messages.
However, only new messages since restore appear in Mail!!!  The restored messages do not appear (although they appear as nnnn.emix in Finder)!
What am I missing here?

WOOPS!
My statement above about seeing current messages in Mail is only "partially correct."  I find that if I close out Mail... then reopen the program, the messages that were there have disappeared... and, they've similarly disappeared from the nnnn.emix files in Finder!
So... something is clearly amiss! 

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