Managing and ipad and ipod on itunes?

I'll be hopefully getting an ipad mini soon, and its been awhile since I've used itunes for apps.  My last (and only) apple product is my old 2nd gen ipod touch.
I have all my apps for the ipod on itunes, but I want to download new apps just for my ipad.  I want to keep the apps seperate on my itunes, is there a way to do this, like having two folders, one for my previously downloaded ipod apps, and one for my new ipad app? (Or something similar).
Thanks!

rustydanielle wrote:
I want to keep the apps seperate on my itunes,
So you will never install the same app on both devices?
You can select only what you want ot install on each device.

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