Master files are not found?

Hello,
I was using Aperture 3 on MacBook air with FileValut activated on my account.

Hello,
Yes, I have press a wrong key (essential cmd+S posts the message).
I was using Aperture 3.1.x on MacBook Air (previous generation) with FileValut activated on my account. The master files was always referenced from the library, the folder structure is following
/Users/username/Pictures/
   Aperture 3 Trial Library.aplibrary/
   Master.private/
     event1/
      event2/
   Master.public/
      cat1/
      cat2/
Recently, I got rid of MacBook Air and replace it with MacMini Server (OS Lion 10.7.2 build 11C74) and installed Aperture 3.2.2 from the Store. MacBook Air has been backed up with Time Machine to externat HDD and data is kept within encrupted bundle. I have failed to restore the bundle to new Mac (due to multiple reasons they are irrelevant here), I have mounted bundle and copied the Aperture library and whole content (been using multiple methong copy with Finder and with cp -R command).
When I open Aperture, it performs migration of my old library format into a new one. A whole data is restored except the links to master they are broken. Aperture thinks that master files a stored on the /Volume/username, howevere ApertureData.xml has correct links.
I know that I can mannualy re-link the masters but I have plenty of files & plenty of events. What would be the best way to re-link a whole lib in obe shot?
Thanks in advanced!

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