Mbox emails missing after import

Hi
I have been having problems with yosemite, and a clean install was needed, so i exported all my mailbox's into mbox format and stored on external harddisk. with the intention to import them again. WHen i have gone to import the Mbox's back, nearly all of hte emails are not visible, where there should be a few hundred there might only be 5 emails. some mboxs dont appear at all.
Please help?

Hmmm, maybe the original problem was directory corruption?
Get Find Any File...
http://apps.tempel.org/FindAnyFile/
Hold Option or alt key when selecting Find to Find All
Use it to search your whole drive for Name contains...
.emlx
(dot ee em el ex)
How many does it find compared to Mail showing?

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