MBP retina slow booting after cloning OS X

I bought a Macbook Pro retina 15" (512/16GB) few days back. OS : Mountain Lion 10.8.4
I wanted to partition the SSD to have Windows 7 in Boor Camp (120 GB), then a partition with ExFAT (260 GB) for shared data between Mac and Windows and lastly Mac HD (120 GB) with Mountain Lion OS X.
After searching in the net, I got this link :http://forums.macworld.com/index.php?/topic/139815-successful-setup-os-x-lion-bo otcamp-win7-data-partition/page__st__14 and followed the steps as described the steps in pane # 21.
So to state again what I did,
1. Used the disk utility to resize the Macintosh HD to 120 GB.
2. Make another partition of 260 GB in the remaining space. So I now have three partition, the first with Mountain Lion, the second (260 Gb) and the third (120 GB) free.
3. Booting with the recovery option, cloned the Mac HD from first partition to the last partition.
4. The system was booting fine with the newly cloned Mac HD (last partition).
5. Then again booting with the recovery option erased the first partition and formatted with ExFat to make it Bootcamp.
After these steps the system is booting fine with the cloned Mac HD bootable drive but booting is very slow. It takes a minute to show up the apple logo. How can I fix this ?
Should I do a fresh installation of OS X in partition 3 ? Please advise.
Thanks and best regards,

I solved the problem of slow booting.
Selecting the Mac HD from the start up disk option solved the problem. There was only one option : Mac HD , so I thought it is selected by default. But after selecting it manually and restarting, now boot takes only a few secs. Thanks.

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    I bought a Macbook Pro retina 15" (512/16GB) few days back. OS : Mountain Lion 10.8.4
    I wanted to partition the SSD to have Windows 7 in Boor Camp (120 GB), then a partition with ExFAT (260 GB) for shared data between Mac and Windows and lastly Mac HD (120 GB) with Mountain Lion OS X.
    After searching in the net, I got this link :http://forums.macworld.com/index.php?/topic/139815-successful-setup-os-x-lion-bo otcamp-win7-data-partition/page__st__14 and followed the steps as described the steps in pane # 21.
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    After these steps the system is booting fine with the cloned Mac HD bootable drive but booting is very slow. It takes a minute to show up the apple logo. How can I fix this ?
    Should I do a fresh installation of OS X in partition 3 ? Please advise.
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