Media Encoder Crawls Except After Restart

Hi,
Im running Premiere CC14 on a newer (2013) Mac Pro 3.5 GHZ 6-core with 64 GB RAM. When exporting a file to Media Encoder, the file only encodes quickly if it is directly after a restart. For example, after a restart a file may take 4-6 minutes to render a 2 minute animation-heavy sequence. But if I try rendering a second file or after a break - the same file can take 1-3 HOURS.
Any suggestions?
Ive noticed the same behavior on CS6.
Thx!
Nate

How long a while? 
-Jeff
It varies.  Maybe a couple of minutes, maybe an hour or more.  I shut down PPro about five minutes ago and it's still listed in Processes.
Update:
It's been about an hour now and it still hasn't quit.
Message was edited by: Webshark2000

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