Media reconnection problem URGENT!

I am in a very urgent situation.
Working on a feature length project and today after opening 2 sequences I was working on yesterday I had to relink media, because my scratch disks were not connected.
While relinking, final cut pop up says that some clips' media start & end has changed , continue with relinking or cancel. I had to continue work so I went on. Alas, now i am in front of a nightmare!
Both sequencies have been altered. In some areas the edits look the same but the content is different, in other areas cuts have been totaly removed.
please help.

Thank you for trying to help. These file were imported by log and capture and were atomaticaly converted to prores 422 LT. I did not mess around with file names, as the names were given during the log and transfer proccess.
This is definetely a final cut bug.
The problem dissapeared (not solved though, as the reasons remain unknown) with the folowing way:
a) I open one of the backed up files and looked at my rough cut wich consists of sequencies.
b) By playing the 2 specific sequencies on the rough cut, there was no error in the edit.
c) By opening these 2 sequencies on the project browser, there was a different edit !!!!
d) By going back to the rough cut and double clicking on the nested sequence, I could see the original edit.
e) Now I had  one specific sequence in the timeline, the same name, the identical sequence, opened in two different tabs. In one tab (the sequence that i entered to through the rough cut) the edit was the original, in the other tab (the one that i opened through the project browser) the edit was distorted !!!
f) I copied the clips of the original edit to a newly created sequence.
g) I deleted the old- problematic sequence
h) i repeated the process with the second sequence that was altered by final cut on its own will.
I hope this will help someone in a similar situation and I keep this question as unsolved, because in reality noone really knows - until now- the reason for this situation. Thank god it was solved.

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    d) By going back to the rough cut and double clicking on the nested sequence, I could see the original edit.
    e) Now I had  one specific sequence in the timeline, the same name, the identical sequence, opened in two different tabs. In one tab (the sequence that i entered to through the rough cut) the edit was the original, in the other tab (the one that i opened through the project browser) the edit was distorted !!!
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        Unavailable 08.08.2005 14:04:54 - 08.08.2005 14:04:54
        Available   08.08.2005 14:05:54 - 08.08.2005 14:34:54
        Unavailable 08.08.2005 14:35:54 - 08.08.2005 14:39:44
        Unavailable 08.08.2005 14:56:17 - 08.08.2005 16:24:13
        Unavailable 08.08.2005 16:28:07 - 08.08.2005 16:29:07
        Unavailable 08.08.2005 16:34:36 - 08.08.2005 17:17:58
        Unavailable 09.08.2005 08:13:36 - 09.08.2005 08:54:33
        Unavailable 09.08.2005 08:57:04 - 09.08.2005 12:46:25
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        Available   09.08.2005 13:43:56 - 09.08.2005 13:55:56
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        Unavailable 10.08.2005 08:10:30 - 10.08.2005 08:35:39
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        [Thr 3612] JLaunchISetP4Port: set p4 port 50004
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    Gregory.

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