Media unlinking after export

I am doing a Keying job, so I am replacing some clips with after effects compositions through the use of dynamic linking. When I do this the previews in Premiere show the media being present, then when I export using media encoder the footage shows up as missing. HELP PLEASE

Had the exact thing happen to me the other day. A very strange bug. After multiple renders of "missing media" with a linked AE comp (doing some camera tracking), i decided to just "Use Previews" in my final render as the AE Comp was showing up in my timeline just fine. However after re-visiting that project the next day (after a restart) and trying to render out my timeline without "use previews", the link worked fine.
I suggest close Adobe, restart, reopen project, click your AE comp inside Premiere and "edit original" to open the AE file. Reduce your render timeline to just that portion, export media, and see if the problem continues.

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