Meg 180 won't boot from HDD

Repair install of Windows XP appeared to work perfectly, but after install and removal of XP install disk PC wouldn't boot.  Noticed initially that IDE drive detect took approxiamtely 90 seconds.  Tried a repair of boot sector and MBR, no help.  Notice during MBR repair that drive was showing as HDD 2?  Attempted boot device order in all possible combintations, (CD, HDD0, HDD1, HDD2, etc,) no help.Moved drive to another computer, boots normally.
Attached HDD to IDE CD-ROM channel in Mega.  Drive detect occurrs instantly and computer boots normally.  I'd try swapping cables, but that requires more surgery than I feel comfortable with, considering the warranty.  Anyone else seen this problem?
Any or all suggestions would be greatly appreciated.

It turns out the Mega 180 primary HDD channel doesn't like Western Digital drives configured with the jumper in the Master position.  As Wonkanoby pointed out, the Western Digital drives are defaulted to Master with no jumper.  No other controller has appeared to care yet, but obviously the Mega primary channel does.  Thanks for all of the tips and especially to Wonkanoby who provided the info that cured the problem.  The Mega is up and running now and happily playing DVD's.

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