Merging old sequence timeline into project with different sequence settings?

I successfully did this yesterday. But when I tried to replicate my efforts, I got different and unwanted results.
I have an old project created in Pro 2.0. It has a timeline that I want to keep. In the old project, the sequece settings did not match the source clip, so 2.0 overscanned in rendering.
I created the proper sequence setting in 5.5. Then I imported the original sequence from the old project. The first time I did it, it took the old timeline and merged it with the new sequence settings--a perfect result. Today when I try to replicate that effort, it brings in the old timeline, but applies the old settings, resulting the overscanned result.
How, step-by-step, do I get the result I want--an old timeline with new settings????
Thanks very much!

Thanks Simon.
Let me clarify. What I'm trying to do is to correct the sequence setting without having to reassemble the whole project.
As I said, I was able to do just that yesterday, but have not been able to duplicate my efforts.

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