Mid-2011 iMac slow after restore

Hello all, thanks for stopping by.
I have  a Mid-2011 12,2 iMac that has been a powerhouse throughout its career. After several large edit projects, no less than 30 full-run shows for national and international broadcast, plus a myriad of other large editorial/graphial projects, I decided it was time to do a complete rebuild and bood to factory settings, seems like a nice way to optimize a system, no?  After cleaning my system drive, erasing it, re-installing Mavericks, and re-installing all NLE software (FCS3 and CC) this machine has gone from hero to zero overnight.  I have never since day one experienced the type of slowdowns that I am now experiencing. For instance, a 45-minute-source encoding into 1080p, 20mbs h.264 through AME would generally take 1.5 hrs. Now, the same export is reporting an 18-hour run time. Similar times with FCP7 and Compressor. There is an exact mirror of this machine running all of the same software and using Mavericks that has not been restored, and it continues to operate at the speeds that I am used to.
If anyone has experienced similar issues, or has any advise, I would be happy to have you join this discussion. And yes, I have turned my machine off and on again, so we are way past anything elementary at this point.
Many Thanks,
Dave O'Connor
  Model Name:          iMac
  Model Identifier:          iMac12,2
  Processor Name:          Intel Core i7
  Processor Speed:          3.4 GHz
  Number of Processors:          1
  Total Number of Cores:          4
  L2 Cache (per Core):          256 KB
  L3 Cache:          8 MB
  Memory:          16 GB
  Boot ROM Version:          IM121.0047.B1F
  SMC Version (system):          1.72f2
  Serial Number (system):          D2*******HJW
  Hardware UUID:          ****
AMD Radeon HD 6970M:
  Chipset Model:          AMD Radeon HD 6970M
  Type:          GPU
  Bus:          PCIe
  PCIe Lane Width:          x16
  VRAM (Total):          2048 MB
  Vendor:          ATI (0x1002)
  Device ID:          0x6720
  Revision ID:          0x0000
  ROM Revision:          113-C2960K-152
  EFI Driver Version:          01.00.507
  Displays:
iMac:
  Display Type:          LCD
  Resolution:          2560 x 1440
  Pixel Depth:          32-Bit Color (ARGB8888)
  Main Display:          Yes
  Mirror:          Off
  Online:          Yes
  Built-In:          Yes
  Connection Type:          DisplayPort
HP 27xi:
  Resolution:          1920 x 1080 @ 60Hz (1080p)
  Pixel Depth:          32-Bit Color (ARGB8888)
  Display Serial Number:          3CM3390RTX 
  Mirror:          Off
  Online:          Yes
  Rotation:          Supported
  Television:          Yes
DELL 2007WFP:
  Resolution:          1050 x 1680 @ 60 Hz
  Pixel Depth:          32-Bit Color (ARGB8888)
  Display Serial Number:          HF7306BN2C2L
  Mirror:          Off
  Online:          Yes
  Rotation:          90
<Edited By Host>

More info...
Sample of current export.  These exports are for client review via Vimeo at an increased bitrate of 10 to 20Mbps
17 hours for these settings is not a normal time assessment(taken full course, this media took just over 11 hours to complete).  To rule out Adobe issues, I opened a similar project via FCP with similar settings.
Given the time this ran through FCP when the screenshot was taken, I can see that this would be about an 11 hour process as well.
So I decided to dumb it down some, and tried a 1280 export in AME. Similar slowdown. Here's where the kicker comes in, on one of our other machines, an exact mirror of this machine, running on the same server makes this 1280 pass in less than one hour. The exact same machine.
My colleague suggested a ProRes export, even though those are much larger than necessary for this step.
5 hours is a very long time for such a low compression export.
So I decided to try directly through QuickTime Pro. (v7.6.6). I took a ProRes 422 source file into QT and set to convert to ProRes 422(LT).
Again, given the time of progress, this looks to be about 5 hours to finish.
In Activity Monitor, I have noticed lately, and even before the system restore, that some QT processes were not responding. So I checked on those processes.
These activities shut down during all encoding processes, Final Cut Pro 7, QuickTime 7, and Adobe Media Encoder. The mirror machine, during all similar processes does not report back on any of these QT issues.
I need big help on this one, and may have to move this issue to another area in discussions.
I know 100% that there are no issues with any peripherals on this machine.  The ONLY thing that has changed since I was experiencing smooth working files, is that I restored the machine to factory settings.
Thanks to anyone who can help point me in the right direction.
Cheers,
-Dave O'

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