Migrate Data from External (non time machine) backup to new HD

I have a late 2007 iMac that HD went bad. Only 51 sectors were bad and I was able to Carbon Copy off 99% of the data onto an external drive. I have gotten a new HD installed and have restored the Lion OS. My question is,  How do I migrate all of the data that I was able to save to new system so everything is there? For example, all of my saved emails, Pictures, desktop, etc, etc.
Thanks for any help that you can give.
P.S. I tried renaming the Applications and System folders out of the way, starting the new drive at a "T"arget drive on the iMac and then copying those two folders (What would copy) onto the new HD on the iMac ... unfortunately it didn't show any success.
Thanks again!

Okay, I have finally completed the task that I set about trying to complete a week ago.
I reformatted the drive s instructed above as one partition of GUID Mac OS Journalled format.
I then wanted to clone my Time Machine back up hard drive to the new hard drive in Disk Utility. When I tried using the restore function, it would copy all the back-up's that had been created using "Backup", but would error out on the first app when copying the time machine backups.
Confused, I then tried Carbon Copy Cloner and it too errored out, but on the third app in the apps folder of the first time machine back up file.
Before giving up I tried to clone the hard drive using Super Duper!
11 hours later I now have a perfectly working cloned hard drive. I redirected my time machines to the new hard drive and it backed up to the correct folder as if nothing had changed. So all is good now and I just wanted to thank everyone for their advice.
Thanks.
PS. I have no idea why DU and CCC errored when copying... but at this point, I don't really care. It worked with Super Duper!

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