Migration Assistant doesn't respect User Templates

Hi everyone,
I work doing Information Technology support for a small (of about 30-40 people) communications department. We just ordered about 9 computers, and they all came with Lion.
Some people that I work with are very change-phobic, and I've created a default user template that respects what they've been doing for a long time and includes what I need to do my job. The main things I've changed include reversing the natural scroll direction (I know, I know, I like it myself, but like I said, some people I work with are incredibly change-phobic) remote login settings, showing the Library folder, and including default login software (such as new backup software we've decided to deploy at the same time as new computer deployments). 
I've found that creating new users on the system respects the user template:
(found at /System/Library/User\ Template/English.lproj/Library/Preferences/).
But when I migrate users (either choosing to migrate settings, or not migrate settings), it doesn't matter, as the OS defaults back to not including the new login software and reverting scroll direction.
I can't hold off much longer in deploying these computers, but I know that I'll immediatly get a lot of requests about how to put settings back to the way they were.
Is there a way to have Migration Assistant respect the default user template (when not migrating settings)?
Best,
Allen

Hi John,
While your link was certainly informative, it isn't really addressing my problem, though I appreciate your response.
I don't know if this may interest you, but you can force the Setup Assistant to run without reinstalling Lion. Just boot into single user mode (command+s), then remove this file:
rm /var/db/.AppleSetupDone
You see, your mac, upon every boot, checks to see if that file is present. Its not really even a file that holds any information (its just a file named .AppleSetupDone). If the file is not present, your computer will run the "first-run wizard," or Setup Assistant.
It's also a trick you can use if you don't have an administrative account on a computer.
Anyway, I'm still hoping I can get answers about why migration assistant refuses to respect the defaults I've set at:
/System/Library/User\ Template/English.lproj/Library/Preferences/
Best, and thanks again,
Allen

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