Migration Assistant vs. Cloning

I apologize for spamming this forum a bit with the same topic but I'm not really getting the answers I need and the particulars of my problem keep changing. I have an G4 MDD DP 1.25 OS X 10.4.11 with a "master" 80 gig unix hard drive, and a 300 gig ATA "slave" mac os journaled extended drive. I'd like to transfer everything to my G5 DP 2.0 OS X 10.4.2 with 120 gig Mac os Journaled extended hard drive. Carbon Copy Cloner and SuperDuper will not work because both drives have to have the same format, or simply won't work with Unix. I just tried Migration assistant, which didn't work with two of the more important app's I was transferring (logic and Mlan connector for my digital mixer). So does anyone have any suggestions? Thanks so much for your time!
p.s. All my app's are on the master hard drive, while all the audio files associated with Logic are on the slave drive. I also bought both machines used so there is no apple care.
Also I have two external hard drives in case that could factor into a solution

I'm not sure what you are calling Unix, but Mac OS X is itself a Unix based operating system. If you have a partition that is some form of Linux, while another Mac OS X that complicates matters though.
Migration Assistant will take applications and data from one Mac of a chip series to another Mac of the same chip series (G3, G4, G5) (Intel Core Solo, Duo, Xeon). If they are of different chip series, Migration Assistant has a tendency to slow if not fail. It also has difficulty with migration of anything but to a newer or the same Mac operating system. Migration to an older operating system may not work, and doubtful if it works to anything but a Mac operating system.
Cloning can only be done between two Macs of exactly the same vintage and series, and naturally with applications that have the correct number of licenses, as well as operating system.
Barring those two, you'll be forced to do a piecemeal migration between Macs, such as described here:
http://discussions.apple.com/thread.jspa?threadID=435350&tstart=0
Message was edited by: a brody
Message was edited by: a brody

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    /Home/Library/Preferences/ (copy the whole folder)
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    Revised 1/6/2009

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