Missing clips by converting to imovie11

I just made the covertion to imovie11. Several clips in projects are With a ? . When i look for the missing clips  i find them back on my external disk where
the new library is made. I can put them one by one in the project, but this is a lot of work. What am i doing wrong that the clip won't come automaticaly in the
projects?
Dirk

Yeah, if I hadn't already spent so much time on the project, I would have just started over but that is not an option. The thing that is so frustrating about this is that the events are both there and intact (the clips will play just fine in the event browser), I just need to link them appropriately in the timeline and for some reason, it's insisting on pulling both interviews from one event where a duplicate clip was somehow copied.  I wouldn't mind just leaving them both there, but I suspect this muddling of things is what's causing the lack of video and the random 'missing clip' issues. Hargh.
What exactly do you mean by fix the files one by one?  Fortunately, there are actually only a few clips in question. The events are interviews; one is a singular hour-long clip and the other is two clips that comprise an hour. Do you mean correcting them in the timeline or in the event browser or in the file folder tree? The files are on an external drive if that somehow helps. 
Russ- thanks to you as well. Hopefully this has shed a little light on my issue. I imported my clips from a camera...not exactly sure what "kind" they are. As for the melding of events, I have no idea what happened. All was fine then suddenly, missing clips everywhere and one event was copied into the other and timeline clips are now inexplicably linked to the combo event, not to the original event which still exists and is fine! I have invested a ton of time on this project (a documentary), so I really need to resolve this. I can't help but think this should be easier than it seems. Everything is there, it just needs to be straightened out.
Many thanks for your interest and help, I really appreciate it!!
TSq

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