Missing files after compression

I have 7600 folders each with 10 .csv files and when I try to compress them by right clicking and choosing 'Compress', I notice that many (roughly 6/7) of the folders will not be in the archive when I uncompress it. I have also tried creating a .dmg which I could then compress, however when I try to copy all the folders into the mounted drive I am told there is not enough space. Which is weird because I took the size from 'get info' and rounded up to the nearest GB.
Has anyone experienced this or have an idea of what is going on?
Thanks in advance.

In Disk Utility, select
File > New > Disk Image from Folder...
from the menu bar. Choose compressed as the image format.

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