Missing Files? - external hard drive

I have been having issues sharing folders on my external hard drive, which is connected to my MacBook.  The folders have been added as shared through my system preferences menu, and the users and permissions don't seem to be a problem.  Alas, sharing these folders is still giving me trouble.
While trying to trouble-shoot this issue, I (apparently foolishly) right clicked on one of the folders (Movies) and selected 'Apply Permissions to Enclosed Items'.  Ever since doing this, all of the files within that folder are no longer viewable...every subfolder is now EMPTY.  I have confirmed that the files are still on the drive and haven't been deleted, but I can not access any of them from my MacBook which is a major problem.
How can I revert whatever settings/permissions I altered by clicking 'Apply Permissions to Enclosed Items'??
Details:
MacBook - OSX 10.7.2
SeaGate HDD formatted as NTFS, running on Mac via Paragon NTFS
Thanks so much for any help!!

With the External HD connected to the AEBS, I went to File -> New -> Folder and named the folder. I had done this a few times, as well as created a few new ones using Picasa and cutting/pasting them into the appropriate folder. I did that a few times. Then one more time I went to File -> New -> Folder on the EHD (not Picasa), named it and hit enter. I got a message saying can't do it because folder doesn't exist. Properties showed correct amount of GB used/remaining. so I know it's there. Latrer I connected directly to PC and folders were there and could be manipulated. I tried reconnecting EHD to USB hub in AEBS and it won't show up as a drive under Computer, but under Network -> <AEBS name> -> drive name.

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    3. Is it likely the files are still on my external hd and I just can't see them (although the low bytes seems to indicate perhaps not)
    4. Is there a reliable data recovery program out there someone can recommend I can get and use that may recover the files, and do I download it on my new mac, and direct it to the external hd?
    5. Would apeture locate the missing iphoto picture files  from the external HD and integrate it into the library on my mavericks?
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    Hi  T,
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