Missing parts of lines in illustrator while they are visible with a pdf viewer

Hi,
I have encountered this issue in a pdf file that I generated using my R (statisitcal language) scripts. The file contains 3 smoothed but wiggly lines where parts of a few lines vanish when I open the pdf file in illustrator. Opening the same pdf in any pdf viewers turns out perfectly however. I need to further edit the pdf file for publication purposes, so having parts of the plot missing makes this a headache. I've done other plots before with R, which can be edited in illustrator perfectly. Please help me solve this if you have any ideas.
My file looks like this in pdf viewers:
In illustrator it looks like this: This is the case for both CS2 and CS6
There was a similar query previously, but the problem didn't seem to be solved. Please help.
http://forums.adobe.com/thread/495432

Too many data points comprising the lines. If you use the Document Info panel and choose Object from the flyout menu with one of the lines selected you will find that there are 32,000 points listed. This ia a maximum for a single path in AI. You will have to either filter the data or do something to reduce the number of data points.

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