Missing pdfs in ibooks after update to IOS 7.01 ipad 2

Updated ipad2 to IOS 7.01. Backed up first. Had some difficulty and had to restore.
All apps, photos,music, docs have migrated but pdfs that I had in ibooks were present when it first rebooted but then disappeared. Are these hiding somewhere or gone for good?

I had similar issues.  Backed up my ipad 2.  updated to new ios about a month ago... ibooks docs all appeared intact, icluding books, pdfs and user manuals i have downloaded over the ladt few years for easy reference.  Now several weeks later al my ibook docs are gone.  just a white screen comes up.  very disappointing "upgrade".  likely delete the app, download it again, and presumably will have to then restore the docs from the backup files...hope it works.  Too much hassle frankly. 

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