Missing raw footage  and storage from P2 card into FCPHD 5.1.2

OK.....so we are importing footage from the panasonic HVX200 P2 cards into FCP HD 5.1.2 and the system settings are config'd to an external drive. i am talking Scratch Capture, Autosave Vault, Thumbnail and Waveform Cache. Why and when would FCP store our source material in a place other than system settings......because we thought we lost some source material and in fact FCP put it somewhere else on its own....is this possible? has anyone experienced this or something similar?
thanks all in advance..
Eric

Where did it put them?
If you tell it that the capture scratch is the external drive, then the footage should be on that drive, in the CAPTURE SCRATCH folder, in the project name folder.
Shane

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