Missing Smart Mailbox and VIP Emails - Post Yosemite Upgrade

Good day,
Hoping for a little help. After the Yosemite and Mail upgrades I have the following issues:
1) Smart Mailboxes are empty and do not contain message that were there pre-upgrade
2) VIP email messages are also not showing up
3) Search for email messages is no longer working
Would love some assistance please.
Thanks.

Have you tried re-creating Photoshop preferences:
To re-create the preferences files for Photoshop, start the application while holding down Ctrl+Alt+Shift (Windows) or Command+Option+Shift (Mac OS). Then, click Yes to the message, "Delete the Adobe Photoshop Settings file?"
Note: If this process doesn't work for you while you're using a wireless (Bluetooth) keyboard, attach a wired keyboard and retry.
Important: If you re-create the preferences by manually deleting the Adobe Photoshop CS6 Settings file, make sure that you only delete that file. If you delete the entire settings folder, you also delete any unsaved actions or presets.
Reinstalling Photoshop does not remove the preferences file. Before reinstalling Photoshop, re-create your preferences.
NEW Video! Julieanne Kost created a video that takes you through two ways of resetting your Photoshop preferences. The manual preference file removal method is between 0:00 - 5:05. The keyboard shortcut method is between 5:05 - 8:18. The video is located here:
How to Reset Photoshop CS6’s Preferences File | The Complete Picture with Julieanne Kost | Adobe TV
Mac OS
Important: Apple made the user library folder hidden by default with the release of Mac OS X 10.7. If you require access to files in the hidden library folder to perform Adobe-related troubleshooting, see How to access hidden user library files.

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Have you tried re-creating Photoshop preferences:
To re-create the preferences files for Photoshop, start the application while holding down Ctrl+Alt+Shift (Windows) or Command+Option+Shift (Mac OS). Then, click Yes to the message, "Delete the Adobe Photoshop Settings file?"
Note: If this process doesn't work for you while you're using a wireless (Bluetooth) keyboard, attach a wired keyboard and retry.
Important: If you re-create the preferences by manually deleting the Adobe Photoshop CS6 Settings file, make sure that you only delete that file. If you delete the entire settings folder, you also delete any unsaved actions or presets.
Reinstalling Photoshop does not remove the preferences file. Before reinstalling Photoshop, re-create your preferences.
NEW Video! Julieanne Kost created a video that takes you through two ways of resetting your Photoshop preferences. The manual preference file removal method is between 0:00 - 5:05. The keyboard shortcut method is between 5:05 - 8:18. The video is located here:
How to Reset Photoshop CS6’s Preferences File | The Complete Picture with Julieanne Kost | Adobe TV
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HT2476 What is the difference between a smart mailbox and a smart mailbox folder? I'm just trying to organize my emails as they come in..Thanks!

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Maybe this will help:
https://discussions.apple.com/message/18794948#18794948
https://discussions.apple.com/message/8711661#8711661

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Message was edited by: Dave Sawyer

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I'm trying to set up my first ever smart mailbox. The intent of this specific mailbox is to track orders as they come in. I do not want to include any replies or replies to replies in this box. But I can't seem to make that happen.
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Missing Smart Mailbox and VIP Emails - Post Yosemite Upgrade

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