.mov files no longer reading Audio in AE CS5

I just upgraded my computer (Vista 64) from Adobe Production Premium CS4 to Adobe Master Collection CS5.
QuickTime has been updated to the latest version, 7.6.6.
In AE, all imported .mov files will show the video just fine, but I can hear no audio.   The speaker icon will show up in the timeline, but if I view the Waveform, I now get two flat lines.   It is as if the Audio was -48.00 dB, but it is set to 0.00. I have even tried to push it up to +12.00 dB, but the Waveform displays only the flat lines.
I have attempted to create a new project and import other .mov files of all sorts, and the same thing occurs - silence during RAM Previews (Audio enabled) and exporting movies (Audio enabled as well).
To prove all is enabled as said, all .aif and .mp3 files are working just fine.  As are .mp4 files with their video.
The issue is really only with .mov files.   Any help is greatly appreciated!

These .mov files are Quicktime Reference Files from AVID Media Composer.   I've been using this
method for years without issues.   I may know what you're going to say - Re-export the
.mov files using a different method.
The .aif files are now acting up as well (from AVID).  As I  scroll the timeline left to right, the Waveforms will litterally  disappear, and my audio will go out of sync.  I can't find any rhyme or  reason to it.
Unfortunately, within the time frame I have, I can't go back and re-do all of these files.  Plus I don't care for the idea that I have to change my routine to suit Adobe's potential flaw in the programing.

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