.mov to .wmv

Running QT Pro 7.6. I have successfully downloaded a YouTube video and convert to QT and it works. I need to put it in a PPT presentation to be used on a PC using wmv.
I tried using an online service (mediaconvert) to change .mov to .wmv, but only the sound was preserved. The video was lost. Same results on multiple attempts.
What do I need to do to make this work. I'm talking about perhaps 30 secs of video max.

http://flip4mac.com
Buy one of the upgrades to the free version.

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