Moving from 4s to 5s but only half my apps are enve listed.

I have synced my old 4s till I am blue in the face but in iTunes and Apps it shows face icons on the right ride of the paqe as 108 apps. I can see them all in my layout.
But on the left side of the page where the apps are all listed in a single row, there are only 54 apps listed. Is that a coincidence that it's exactly half of the apps that I own?
When I do the sync and backup to the itunes computer and then restore to the new 5s through iTunes restore, it only gives me the 54 apps that are listed in the left side of the apps page instead of the 108 that I actually have on the right side of the page where the icons are shown as they appear on your iphone. And only those 54 on the left side will move over to the 5s, so I am missing 54 apps. Every last one of them was purchased through itunes App store either on my iphone or through itunes on the computer.
When I goe to my iTunes account on the computer, select Apps from the menu and look for a history of what I have purchased, it only shows me songs I have bought.
I'm going crazy trying to get the other 58 working apps off my 4s to the 5s. Every Apple help file that you keep sending me says nothing about this or how to get them.
I hate the thought of having to go to the Apple store here to get this figured out. I was so hoping someone here would know what's happening to my other apps!
Help if you can.
Thanks,
Steve

That should certainly work. Apps are not included in the iCloud backup. If you restore from iCloud you must re-sync the apps using the App Store on the phone - Updates->Purchases->Not on this phone, or sync through itunes on your computer. Backup and sync the old phone to iTunes, then Restore the backup and sync to get your apps and media back.

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Moving from 4s to 5s but only half my apps are enve listed.

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