MSI z77A-G43 - After Shutdown - Fans will not turn off

Just installed a new MSI Z77A-G43 Motherboard for my husband since his old motherboard died. The one thing I've noticed though is that the fans will not turn off after I do a shutdown and I'd have to do a manual shut down instead. Any ideas what could be happening? Also it will randomly restart when not shutdown completely with the fans still on.
Here are the specs of the PC.
MOBO: Z77A-G43
Processor: Intel i5 - 2500k Quad Core
Video Card: Geforce - GT 610
Ram: 8 Gigs
Hard Drive - 128gb ssd and 1.5 tb hdd
It's really barebones since I'm trying to just get it to run then get it back to normal working order with the next pay check
EDIT!!!!::
Forgot OS is Window 7 Ultimate X64

If you are sure that your CPU is seated properly and that the PWM fan connector is seated correctly, then you may want to test with another known working PSU. I am not saying that your PSU is faulty, but before exhanging the board, I would definitely test that as well.
EDIT: Just a question, did you disconnect the power switch and the other front panel connectors of your case and started the PC by shorting the Power switch [pins 6 and 8 on JFP 1]with a screw driver tip ? The remote possibility exits that the cables may have been connected incorrectly or may have a short.

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MSI z77A-G43 - After Shutdown - Fans will not turn off

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