MSI Z87-G45 Can't find SSDs after BIOS update v1.9

So I updated the BIOS to v1.9 using MSI Live Update 6 just cuz I was lazy.
After reboot my Samsung SSD 840 EVO couldn't be found, didn't show up in BIOS System Information either. My WD HDD was found without problems though.
I rebooted a few times and eventually the disk was detected, but after rebooting again it didn't show up any more. Turns out it only showed up about 1/10 boots.
I installed a new Samsung SSD 850 EVO just to test it out, but it wasn't detected either, still only the HDD. Same symptoms, only once in a while were the SSDs ever detected.
So I eventually downgraded the BIOS (put it on a USB stick this time) to v1.8 and now they are all found 100% of the time.
Fun times.

Out of curiosity: did you clear CMOS after flashing BIOS to 1.9?
And what way did you downgrade? What if you would use this method to install 1.9 again?

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