MTS File Import CS6

I have read through quite a few discussions on this, but I have tried many things and am really stuck right now.
Just finished a 3 camera wedding and the wide locked down cam was a Canon camcorder(Vixia HF M301) shooting 30(60i) AVCHD
When I import the files in the media browser to the project, everything is fine all the way from 00000 - 00035. 00036 is correct, but repeats itself through 00039.
00040 appears to be correct but repeats itself through 00046.
I have tried using media browser and file import methods and also dragging the clips directly onto the timeline. I have tried multiple methods of importing the private folder and directly with the file. The windows directory shows a matching XMP file with every clip which Premiere CS6 doesnt seem to recognize.
I had experienced something like this once on an older Canon camcorder using a hexidecimal file numbering system.
This is the reception section and since this cam ran for all most all of eve, I need it to sync audio with two other cams. I guess an option would be to re-encode providing that media encoder will recognize them correctly,and provided they would match relinking them, if not I am in deep doo-doo.This is a fresh project, and I have even tried to import them into CS5.5 to no avail.
Any thoughts or suggestions?
Thanks

Jim after a very long and frustrating day I finally managed to get it to work per your suggestion. I have always been diligent about copying all of the folder structure and making backups with my cards. I shoot GH2's and haven't had to deal with spanned files.
I had read your instructions earlier today while researching, and every attempt I made at getting to the file at the bottom of the directory, the view as AVCHD was grayed out. Just now cleaned the caches and dumped the prefs and made a fresh project, and was able to get view as avchd to work for the first time. Very happy right about now, and looking forward to editing tomorrow! Thanks so much!

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