Multiple video layers in clip

When attempting to view a clip in Quicktime, the clip will play as normal and then suddenly switch between scenes. At this point, it is possible to drag the slider backwards in time and view a different scene. A third scene can be viewed if the cursor is rewound and played from precisely the right point towards the beginning of the clip.
This clip was downloaded using Limewire and "previewed" before the download was complete. My theory is that some sort of Quicktime cache is enabled which permanently set the length of the clip at a fixed time... not allowing the clip to play for a longer length of time after it had been downloaded.
Is there any way to reset this file so that the multiple videos layers can be viewed continuously as they should?
Powerbook   Mac OS X (10.4.4)  

If its an MPEG file, use MPEG Streamclip to "Fix timecode breaks" and then "Convert to MPEG" to save the video into a new MPEG file with continuous timecode for better playback in QuickTime Player. Or just play it with VLC or MPlayer which will play it regardless of timecode errors.
http://www.squared5.com/

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