Music Files - when Itunes reshuffles them to a mess

How do merge my music files back into one. I tunes has whipped them out and split my music (randomly).  I have spent too many hours and have too many songs to do it manually. 

*Whenever I plugged my iPOD to my old computer, the files in iTunes would automatically upload to my iPOD*
Check your update settings. Connect your iPod and click on it's icon in the iTunes source list (the narrow pane on the left). This will bring up the preferences tabs in the main pane on the right. The first tab you'll see is Summary, look for "manually manage songs and videos", if there is a check mark there then the iPod is set to update manually and you have to drag songs from the iTunes library to the iPod to load them on. If you want to update automatically you need to remove the check mark from there (I would also remove the "enable disk use" check mark unless you want to use the iPod as a removable storage device) and click the Apply button in the right hand corner:
Loading songs onto iPod automatically - Windows
Managing content manually on iPod

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